Bant005678.1
Basic Information
- Insect
- Belgica antarctica
- Gene Symbol
- -
- Assembly
- GCA_000775305.1
- Location
- Belgica.321:23487-33881[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.29 6.4e+02 -0.1 0.0 22 44 54 76 51 83 0.71 2 9 0.0018 3.9 7.0 0.0 21 49 294 322 290 325 0.87 3 9 0.00024 0.53 9.8 0.0 21 45 322 346 320 353 0.87 4 9 0.006 13 5.3 0.0 21 45 350 374 345 381 0.90 5 9 0.05 1.1e+02 2.4 0.0 21 45 406 430 400 437 0.82 6 9 0.00047 1 8.9 0.1 23 47 436 460 430 466 0.84 7 9 0.041 90 2.6 0.0 22 44 491 513 484 518 0.89 8 9 0.00088 1.9 8.0 0.0 21 51 518 548 514 550 0.87 9 9 0.00057 1.2 8.6 0.1 21 45 546 570 542 576 0.91
Sequence Information
- Coding Sequence
- ATGTTGGCGAATAACAAGTTCGACGCCCAGAAGCAGCAGATCCAGAACTTTGGTTTCCCCAGTGGCAGTAAAATTATTCTCTATGGCGGGCACTGCATTTTGTCAGACAACCAGATGCAGAAGATTGCTGCAGGAGGTGCGACCGTGATTGGCACAATCGAGCAGCCGCAAATATGTCATCTGTGCCAAAAGGACTTCCCGTCGCTGGCAAGTCTGCAAAATCACATCAAGGATCAGCACCTTGACAACAAGATTTATCGGAACATCATAGCCGTGTCGACGGTGGGCAACCAAGTGACAATGATTCCAGCCACTCAAGCCATCCAACAGTATCAGATCGCGACAAACACAGTGAAGATTGAGAAAGAGTTGCTGCCAGACATGATCAAGCAACCCGAATACACGACAACCGTAGCCAACATCAACGTCGGCCATCCAGTGATTCAACACATTCAAATCCAGcagcgagagaaagagaagccGAACGTGGTACAGGTCATCAAACAGAACCCAGTGGAGTATCACATCCAACAGCAGGAGCATGCGGCGATGGTGGTCGCGTCGATGAACCAAAAGTCCGGCATCTCGAATCCCTTCCTGAACAGCACAATAAAATACGAGCTGCATGCACAACCTGTTCAGCTCGTCACCGAAATCTATCCACAAATGATTGCCGATGCACCTAAATCAGAAGACTTGAACTCACAATCGTCGGTGTCATCGCCAGGATCGTCGATAAATGTGCAAACGAGCACAGCCACTTCAACGGGACCAATGTTGAGCAACGGTGAGACGATGGAAAAGCAGCACAAGTGCTTGGTGTGCGACAAGTTCTTCACAACAGTTGGAAATTTGAACatccatttaaaaattcacgcaGGAGAAAAGCCATACAAATGCAACGTGTGTGGAAAAGGCTTCATTCAATCAAATAATCTGGCAACCCACATGAAAATCCATACCGGTGAAAAACCGCACGGTTGTACAATTTGCGGTAAGCGCTTCAGCCAGTCAAACAATCTTAAAACCCACATCCGAACGCATACTGGAGAAAAGCCATTCAAATGCTCGCTttgcgaaaaaagttttaatcagaAAAACAATCTAACGACGCATTTGAGAACTCACAGCGACTACCACCCGTCCAACTGTTCCATGTGCAACCGGACCTTCATGTCTTTTAATGAGCTTTTCACCCACATGCGAGAACATGCCGAGGAAAAGCCGCATCTCTGCACTGTTTGTAGCAAGGTTTTCAACGTCCAAAGTGATCTCAACGAGCACATGAAGCAGCACTCGAACCCGAAGCCGTATAAATGTGATatttgCCAAAAGCAATTTACACAATCCAACAACTTGAAAACCCACATCAAGACTCATATTTATCAAGATCCCTTCAAGTGCAGCATGTGCACGAGATCTTTCCAGGACCAGGAAGAATATCAACTTCATGTGAGAGTTCACACGTTCGATAAGCCCTACGAGTGCACCTACTGcggaaagaaatttattcaaagcaaCAATTTAAAGACACATGTGcgaACTCATACTGGAGAAAAGCCTTATGCTTGCAACGTCTGTGGAAAGTCTTTCAACCAGAAGAACAATCTCAACACACATCTGAGAGTTCATACTGGTGAAAAACCCTTCGAATGTCATTTATGTGATCGCCGCtttaatcaatcaaataatCTCAACAAGCATCTGAAGACCCACGGCCAGGAGAAGGAGATGAGTAAAGCCATGGAAACTGAGATGGAAAAGATGATGAACAACGTCATCATGCAGCaacaataa
- Protein Sequence
- MLANNKFDAQKQQIQNFGFPSGSKIILYGGHCILSDNQMQKIAAGGATVIGTIEQPQICHLCQKDFPSLASLQNHIKDQHLDNKIYRNIIAVSTVGNQVTMIPATQAIQQYQIATNTVKIEKELLPDMIKQPEYTTTVANINVGHPVIQHIQIQQREKEKPNVVQVIKQNPVEYHIQQQEHAAMVVASMNQKSGISNPFLNSTIKYELHAQPVQLVTEIYPQMIADAPKSEDLNSQSSVSSPGSSINVQTSTATSTGPMLSNGETMEKQHKCLVCDKFFTTVGNLNIHLKIHAGEKPYKCNVCGKGFIQSNNLATHMKIHTGEKPHGCTICGKRFSQSNNLKTHIRTHTGEKPFKCSLCEKSFNQKNNLTTHLRTHSDYHPSNCSMCNRTFMSFNELFTHMREHAEEKPHLCTVCSKVFNVQSDLNEHMKQHSNPKPYKCDICQKQFTQSNNLKTHIKTHIYQDPFKCSMCTRSFQDQEEYQLHVRVHTFDKPYECTYCGKKFIQSNNLKTHVRTHTGEKPYACNVCGKSFNQKNNLNTHLRVHTGEKPFECHLCDRRFNQSNNLNKHLKTHGQEKEMSKAMETEMEKMMNNVIMQQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01353014;
- 90% Identity
- iTF_00199244;
- 80% Identity
- iTF_00199244;