Bant006926.1
Basic Information
- Insect
- Belgica antarctica
- Gene Symbol
- PAX6
- Assembly
- GCA_000775305.1
- Location
- Belgica.327:3834-8289[-]
Transcription Factor Domain
- TF Family
- PAX
- Domain
- PAX domain
- PFAM
- PF00292
- TF Group
- Helix-turn-helix
- Description
- The paired domain, a ~126 amino acid DNA-binding domain, is found in eukaryotic transcription regulatory proteins involved in embryogenesis. Initially identified in Drosophila’s paired (prd) protein, it typically resides in the N-terminal region and may be followed by an octapeptide, a homeodomain, or a Pro-Ser-Thr-rich C terminus. Paired domain proteins act as transcription repressors or activators, with DNA-binding specificity mediated by three subdomains. Crystal structures reveal a bipartite DNA-binding paired domain: an N-terminal subdomain (PAI) and a C-terminal subdomain (RED), linked by a flexible linker. Both subdomains contain a helix-turn-helix motif that binds DNA's major groove, while the linker may bind the minor groove. Variations in domain usage across Pax proteins and isoforms determine sequence specificity.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.4e-74 1e-70 234.8 0.7 1 125 20 144 20 144 0.99
Sequence Information
- Coding Sequence
- ATGCATGGACACGCAACTGCCATTGGCCAAACATCGCTGTTTGGTTGCTCGTCGGCCGGTCACAGCGGAATCAATCAGCTGGGTGGTGTTTATGTGAAtgGTCGTCCACTACCCGATTCAACacgacaaaaaattgttgagcTCGCTCATTCAGGTGCCCGGCCTTGTGATATTTCCCGCATATTACAGGTTTCGAATGGATGTGTTAGTAAAATATTAGGAAGATATTACGAAACCGGCTCCATAAAACCGCGGGCAATAGGTGGATCGAAGCCGAGAGTTGCTACCCAGAACGTAGTGAATAAAATAGCTGATTACAAACGCGAATGTCCGAGCATATTTGCCTGGGAGATACGCGACCGGCTGCTGTCGGAAGCCGTCTGCAATAGTGATAATATTCCATCGGTTTCATCGATCAACCGGGTACTACGAAATTTGGCCTCACAAAAGGAACAGCAATCAGTTCCCAGCGATTCCGTCTACGACAAGCTTCGAATGTTCAATGGCCAATCAGGTGGATGGGCTTGGTATCCGACCAGCAACACAGCACCGACACACCTATCTTTACCTCCAACACCTTCGTCAGCACAACTTAGCGGGCAATTAAGCAGAGAAGAACTGCAAAAACGTGGTGAGTTGAGAATAGAGTTAAGCAGCGATCATCGCGCATCGCCGATTTCCGATTTATGA
- Protein Sequence
- MHGHATAIGQTSLFGCSSAGHSGINQLGGVYVNGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIKPRAIGGSKPRVATQNVVNKIADYKRECPSIFAWEIRDRLLSEAVCNSDNIPSVSSINRVLRNLASQKEQQSVPSDSVYDKLRMFNGQSGGWAWYPTSNTAPTHLSLPPTPSSAQLSGQLSREELQKRGELRIELSSDHRASPISDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01132867; iTF_00749636; iTF_01195940; iTF_00581478; iTF_00338279; iTF_01043687; iTF_00693768; iTF_01224200; iTF_01051146; iTF_00991756; iTF_01318189; iTF_00624686; iTF_01022958; iTF_00335825; iTF_01431858; iTF_01163894; iTF_01044665; iTF_01265724;
- 90% Identity
- -
- 80% Identity
- -