Bsom039137.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- -
- Assembly
- GCA_963576735.1
- Location
- OY755198.1:4083893-4089517[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00033 0.049 15.4 0.3 1 23 268 290 268 290 0.97 2 20 0.00052 0.076 14.8 0.1 2 23 296 317 295 317 0.97 3 20 7.2e-05 0.011 17.5 1.6 1 23 323 345 323 345 0.98 4 20 0.00011 0.016 16.9 1.6 1 23 351 373 351 373 0.98 5 20 0.013 1.9 10.3 7.1 1 23 379 401 379 401 0.99 6 20 1.5e-06 0.00022 22.8 2.5 1 23 407 429 407 429 0.98 7 20 0.00016 0.024 16.3 6.5 1 23 435 457 435 457 0.97 8 20 1e-05 0.0015 20.1 2.0 1 23 463 485 463 485 0.98 9 20 0.0013 0.19 13.5 2.1 1 23 491 513 491 513 0.97 10 20 0.00014 0.021 16.5 0.3 2 23 520 541 519 541 0.97 11 20 1.2e-05 0.0018 19.9 0.8 1 23 547 569 547 569 0.99 12 20 2.3e-05 0.0034 19.0 1.1 1 23 575 597 575 597 0.98 13 20 0.0047 0.7 11.7 5.3 1 23 630 652 630 652 0.97 14 20 2.5e-06 0.00037 22.0 3.2 1 23 658 680 658 680 0.98 15 20 0.00017 0.024 16.3 3.1 1 23 686 708 686 708 0.98 16 20 0.01 1.5 10.7 3.7 3 23 716 736 715 736 0.97 17 20 0.00038 0.056 15.2 4.2 1 23 742 764 742 764 0.98 18 20 0.31 46 6.0 3.4 2 21 771 790 770 792 0.93 19 20 0.001 0.15 13.8 3.2 2 23 801 822 801 822 0.98 20 20 3.1e-06 0.00046 21.7 1.3 1 23 828 850 828 850 0.98
Sequence Information
- Coding Sequence
- atgTCTACTTTACAATTTTGTCGATGTTGCTTATCTACAGACACGAGGTTTTGCAATGTTTCTGACAAAACAGCGGAGGTTTACAGGGATCTGACTGGATTACCGGTAAAGTTGGAGCTGTCCTCACAAGCATTCTGCTATACTTGTGAATATTTCATTGTGAGAGTTCATCATTTCCGTAAACAGTGTTTGAATGTCAATAATATCATCAATAATTTGATATTGTCTGATGATGGGctaaattataaaaaaattaaagcagCTGAAAGCGAGTTAgagaaattaaatcaaactcaactcaatcCTGTAGTAGTCAACTGTTGCGAGACTTGTGAAAAAAGCAGTGCGAGTTCAGATAGCGCAGACATACATTCAGATGGAGACGAAGACCATATTGCTGCTGACTCAAATTCAAAACAGAATGATGAAGAGAATACAGCTGATGTGGTTGAGTCAGGTTTTGTCAATATATATGATGATTTTATGGATAATGTTGAAACTAAATTAAGTTACTCCGACAATGATTGTGATAAAGAAGATAATGTTCCATTGAATAGAGTTAAAGAAGAGAAGGAGAATCAGGAACCCAATGTAGATGTAGTTAAtgGACACCAACGGGGAACAAGAAATGAAAACAACAATTCTATAGAATCTGAATCTATTGAACATAATAAGAGGTACGTGGTAAGGCCTATCTGCAAGAAGGATTATAGTTTGGACACAACAGAATATTGCGATATCAAGATTACAGGAATAAAATCTGAAAGTATTAAAGATGATACTAAAAAGAAAAGATTAAGTTATATTTGTGACTATTGCAAGAAACCGGTCAGCAGAAAACGCGTCCTCATAAAACATATAGCCAACCACGGCCAGAATGATTTAGTCTGTCCAATTTGTTATCTACGATTTGTTAATACACAAGCTTTCGCAATTCATATGAAGACCCATTCGGTTGAAAGACCTTTCAGCTGCGATTTATGTAATCGCAAATTTAAAAGAATCGATCGCTTGAAAGATCATCTTCGTATCCACGATGGCGTCAAACCGTATAACTGTGATTTGTGCGATAAATCTTTTCTACGTAAAGATAGTTTGAAAAGTCATAAAATAACTCACAGTGGTGAGAAAAAATTTCAGTGCACTCTCTGTGATAGAAGATTTCGGTGTTACTCGAGTTTGAAATCTCACTTCAAGACACACACTGGAGAAAAACCGTACAACTGTAACATTTGTCCTAAACGATTCCGTTCCAAAACTCTTTTAAAACAACACACTAACACACATCTGGGTGCAAAACATTTTGCGTGCCATTTATGTGATAGGAAATACTATCGTAATACTCATTTACAATCTCATCTAAAGACTCATACAGACGAGAAAGCTTTCAAATGTGATAAATGTGACAAAAGTTTCGTAACCAGAACGAGATTACAAACTCACGTCGATACACATTCGGAGGTTAAGCTTCACGTATGTCTGACGTGTggtaacaaatataaaacagTGGCTTCTTTAAACAGACATCTCAAAAGGCATATTAATGTAAATCTGATCAAATGTGATATATGCAGTAAGTTGTTAAGTGATAAGAAAAGTTTGGAAGCGCATCTTCGGATGCACGCTGGGGTAAAACTATTTCAATGTGATTTTTGCGGTAAAAAGTTGGCAAAACGAAGTTCTTTGATTACCCATCTCAGGATACACACCGGAAACAAGCCTTTCCAGTGTGATGATTGCAAGAAATCGTTCTTTAGTAAAGATGTTTTAAGAACTCATGTTTTGATACATATGGACAGGAAATTTAAATGTGCCGTGAGTGCAAAACAGTTTACATGTTTTAATAACATGATGTCTCACTTGAGAGTGCAAACTGTTAAGAAAACATTCGCTTGTCATTTATGCGATAAGAAATACAGTGATAATCGTTGTTTTGAAGGGCATTTGAGATATCATAATGACGAAAATCCTTTTGAATGCAATTATTGTGGTAAAAAATTTCGTTATAGCGGTAGTTTTAAATATCACATCAGACAGCACAAACAACGCAGTTTATATAAGTGTGAAGTGTGTGATAAAACATACAGTACTGTTCGTTGTTTAAAGTTACACAGTAGGATACATACCGGGGAGAAATTACGAAATTGCGATTTTTGcgacaaaaaatttacttgcAACAATACTCTAACAGCACATCTCTTAACTCACACTGGAGAAAAACCTTTCCAATGTGATATATGTCACGAAAAGTTTACCTACAAGAGAACGTTTAGATCTCATGTTATTTCACACACTGGAGAAAATCTTTTAAAGTGTGATATCTGTGATGGAAAGTTTACTTCAGATTACAAATTTAGGATGCACCTAAAGTGCCACGTACCGAGCACTGGCGTAGAACCCAAATGCGACATATGTCACAAACAATTTGCCAATGACACAGTTCTCAAGTCCCACCGAAGGACACACACTAAAGAAAAGAATTTCCAATGTGATATTTGTAAAAAGAAATTTACGACAAaggcaaatataaaaaatcatgtTCAAATTCACgccaaaaaaattaagaaataa
- Protein Sequence
- MSTLQFCRCCLSTDTRFCNVSDKTAEVYRDLTGLPVKLELSSQAFCYTCEYFIVRVHHFRKQCLNVNNIINNLILSDDGLNYKKIKAAESELEKLNQTQLNPVVVNCCETCEKSSASSDSADIHSDGDEDHIAADSNSKQNDEENTADVVESGFVNIYDDFMDNVETKLSYSDNDCDKEDNVPLNRVKEEKENQEPNVDVVNGHQRGTRNENNNSIESESIEHNKRYVVRPICKKDYSLDTTEYCDIKITGIKSESIKDDTKKKRLSYICDYCKKPVSRKRVLIKHIANHGQNDLVCPICYLRFVNTQAFAIHMKTHSVERPFSCDLCNRKFKRIDRLKDHLRIHDGVKPYNCDLCDKSFLRKDSLKSHKITHSGEKKFQCTLCDRRFRCYSSLKSHFKTHTGEKPYNCNICPKRFRSKTLLKQHTNTHLGAKHFACHLCDRKYYRNTHLQSHLKTHTDEKAFKCDKCDKSFVTRTRLQTHVDTHSEVKLHVCLTCGNKYKTVASLNRHLKRHINVNLIKCDICSKLLSDKKSLEAHLRMHAGVKLFQCDFCGKKLAKRSSLITHLRIHTGNKPFQCDDCKKSFFSKDVLRTHVLIHMDRKFKCAVSAKQFTCFNNMMSHLRVQTVKKTFACHLCDKKYSDNRCFEGHLRYHNDENPFECNYCGKKFRYSGSFKYHIRQHKQRSLYKCEVCDKTYSTVRCLKLHSRIHTGEKLRNCDFCDKKFTCNNTLTAHLLTHTGEKPFQCDICHEKFTYKRTFRSHVISHTGENLLKCDICDGKFTSDYKFRMHLKCHVPSTGVEPKCDICHKQFANDTVLKSHRRTHTKEKNFQCDICKKKFTTKANIKNHVQIHAKKIKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00198490;
- 90% Identity
- iTF_00198490;
- 80% Identity
- -