Basic Information

Insect: Bedellia somnulentella
Gene Symbol: -
Assembly: GCA_963576735.1
Location: OY755198.1:268627-276152[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.00043 0.063 15.0 0.8 2 23 269 290 268 290 0.95

2 21 0.00019 0.028 16.1 0.1 2 23 296 317 295 317 0.97

3 21 3.7e-05 0.0055 18.4 1.3 1 23 323 345 323 345 0.98

4 21 0.00032 0.048 15.4 2.0 1 23 351 373 351 373 0.98

5 21 0.0013 0.19 13.5 6.8 1 23 379 401 379 401 0.99

6 21 7.3e-06 0.0011 20.6 3.2 1 23 407 429 407 429 0.98

7 21 0.00015 0.022 16.4 6.9 1 23 435 457 435 457 0.97

8 21 1e-05 0.0015 20.1 2.0 1 23 463 485 463 485 0.98

9 21 0.0039 0.57 12.0 1.8 1 23 491 513 491 513 0.97

10 21 0.00025 0.037 15.7 0.3 2 23 520 541 519 541 0.97

11 21 2e-05 0.0029 19.2 0.2 1 23 547 569 547 569 0.99

12 21 0.015 2.2 10.2 2.5 1 23 575 597 575 597 0.98

13 21 0.00051 0.075 14.8 1.4 1 23 602 624 602 624 0.99

14 21 0.00013 0.02 16.6 5.4 1 23 630 652 630 652 0.97

15 21 7.8e-07 0.00011 23.6 2.0 1 23 658 680 658 680 0.98

16 21 1.5e-05 0.0023 19.6 1.0 1 23 686 708 686 708 0.98

17 21 0.0076 1.1 11.1 2.9 3 23 716 736 715 736 0.97

18 21 0.00079 0.12 14.2 3.1 1 23 742 764 742 764 0.98

19 21 0.037 5.5 8.9 3.4 2 21 771 790 770 792 0.93

20 21 0.00099 0.15 13.9 3.2 2 23 801 822 801 822 0.98

21 21 9e-06 0.0013 20.3 1.4 1 23 828 850 828 850 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.00043	0.063	15.0	0.8	2	23	269	290	268	290	0.95
2	21	0.00019	0.028	16.1	0.1	2	23	296	317	295	317	0.97
3	21	3.7e-05	0.0055	18.4	1.3	1	23	323	345	323	345	0.98
4	21	0.00032	0.048	15.4	2.0	1	23	351	373	351	373	0.98
5	21	0.0013	0.19	13.5	6.8	1	23	379	401	379	401	0.99
6	21	7.3e-06	0.0011	20.6	3.2	1	23	407	429	407	429	0.98
7	21	0.00015	0.022	16.4	6.9	1	23	435	457	435	457	0.97
8	21	1e-05	0.0015	20.1	2.0	1	23	463	485	463	485	0.98
9	21	0.0039	0.57	12.0	1.8	1	23	491	513	491	513	0.97
10	21	0.00025	0.037	15.7	0.3	2	23	520	541	519	541	0.97
11	21	2e-05	0.0029	19.2	0.2	1	23	547	569	547	569	0.99
12	21	0.015	2.2	10.2	2.5	1	23	575	597	575	597	0.98
13	21	0.00051	0.075	14.8	1.4	1	23	602	624	602	624	0.99
14	21	0.00013	0.02	16.6	5.4	1	23	630	652	630	652	0.97
15	21	7.8e-07	0.00011	23.6	2.0	1	23	658	680	658	680	0.98
16	21	1.5e-05	0.0023	19.6	1.0	1	23	686	708	686	708	0.98
17	21	0.0076	1.1	11.1	2.9	3	23	716	736	715	736	0.97
18	21	0.00079	0.12	14.2	3.1	1	23	742	764	742	764	0.98
19	21	0.037	5.5	8.9	3.4	2	21	771	790	770	792	0.93
20	21	0.00099	0.15	13.9	3.2	2	23	801	822	801	822	0.98
21	21	9e-06	0.0013	20.3	1.4	1	23	828	850	828	850	0.98

Sequence Information

Coding Sequence: ATGTCTACTTTACAATTTTGTCGATGTTGCTTATCTACAGACACGCGGTTTTGCAATGTTTCTGACAAAACAGCGGAGGTTTACAGGGTTCTGACTGGATTACCGGTAAAGTTGGAGCTGTCCTCACAAGCATTCTGCTATACTTGTGAATATTTCATTGTGAGAGTTCATCATTTCCGTGAACAGTGTTTGAATGTCAATAATATCATCAATGATTTGATATTGTCTGATGATGGGCTAAACTATAAAACAATTAAAGCAGCTGAAAGCGAGATAGAGAAACCAAATCCAACTCAACTCAATCCTGTAGTAGTCAACTGTTGCGAGGCTTGTGAAAAAAGCAGTGCGAGTTCAGATAGCGCAGACATACAATTAGATGGAGACAAAGACCATACTGCTGCTGACTCAAATTCAGAACAGAATGATGAAGAGAATACAGCTGATGTGGTTCAGCCAGGTTTTGTCAATATATATGATGATGTTATGGATAATGTTGAAACTAAATTAAGTTACTCCGACAATGATTGTGATAAAGAAGATAATGTTCCATTGAATAGAGTTAAAGAAGAGAAGGAGAATCAGGAACCCAATGTAGATGTAGTAAATGGACACCAACGGGGAGCAAGAAATGAAAACAACAATTCTATAGAATCTGAATCTATTGAACATAATAAGAAGTACGAGGTAAGGCCTATCTGCAAGAAGGATTATAGTTTGGACACAACAGAATATTGCGATATCAAGATTACAGCAACGAAATCTGAAAGTATTAAAGATGATACTAAAAAGAAAAGATTAAATTGTATTTGCGACTATTGCAAGAAACCGGTCAGCAGAAAACGCGCCCTCATAAACCATATAGCCAACCACGGCCACAATGATTTAGTCTGTCCAGTTTGTTATCTAcgatttattaataaacaagCTTTCGCAATTCATATGAAGACCCATTCAGTTGAAAGACCTTTCAGCTGCGATGTATGTAATCGCAAATTTAAAAGAATCGATCGCTTGAAAGATCATCTTCGTATCCACGATGGCGTCAAACCGTATAACTGTGATTTGTGCGATAAATCTTTTCTACGTAAAAATAGTTTGAAAAGTCATAAAATAACTCACAGTGGTGAGAAAAAATTTCAGTGCACTCTCTGTGATAGAAGATTTCGGTGTAACTCGAATTTGAAATCTCACTTCAAGACACACACTGGAGAAAAACCGTATAACTGTGACATTTGTCCTAAACGATTCCGTTCcaaaattcttttaaaacatCACACTAACACACATCTGGGTGCAAAACATTTTGCGTGCCATTTGTGTGATAGGAAATACTATCGTAAAACTCATTTACAATCTCATCTAAAGACTCATACAGACGAGAAAGCTTTCAAATGTGATAAATGCGACAAAAGTTTCGTAACCAGAACGAGATTACAAACTCACGTCGATACACATTCGGAGGCTAAGCTTCACGTATGCCTGACGTGTggtaacaaatataaaacagTGGCTTCTTTAAACAGCCATCTTAAAAGGCATATTAATGTAAATCTGATCAAATGTGATGTATGCAGTAAGTTGTTAAGTGATAAGAAAAGTTTGGAAGCGCATCTTCGGATGCACGCTGGGGTAAAACTATTTCAATGTGATTATTGCGGTAAAAAGTTGGCAGAACGAGGTTCTTTGATTACCCATCTCAGGATACACACCGGAAACAAGCCTTTCCAGTGTGATGATTGCAAGAAATGGTTCTTTAGTAAACATGTTTTAAGAACTCATGTTTTGATACATATGGACAGGAAATTTAAATGTGCCGTGTGTGCAAAACAGTTtacattttttaataacatGATGTCTCACATGAGAGTGCACACTGGTGAGAAACCATTCGCTTGTCATTTATGCGATAAGAAATACAGTGATAATCGTTGTTTGAAAGCGCATTTGAGATATCATAATGACGAAAATCCTTTTGAATGCAATTATTGTGGCAAAAAATTTCGTCTTAGCGGTAGTTTGAAATATCACATCAGACGGCACAAACAACGCAGTTTATATAAGTGTGAAGTGTGTGACAAAACATACAGTAATGTTCGTTCTTTAAAGTTACACAGTAGGATACATACCGGGGAGAAATTACGAAATTGCGATTTTTGcgacaaaaaatttacttgcAACAAAAGTCTAGCAGCACATCTCTTAACTCACACTGGAGAAAAACCTTTCCAATGTGATATATGTCACGAAAAGTTTACCTACGAGAGAACGTTTAGGTCTCATGTTATTTCACACACTGGAGAAAATCTTTTAAATTGTGATATCTGTGATGAAAAGTTTACTTCAGATTACAAATTTAGGACGCACCTAAAGTGCCACGTACCGAGCACTGGCGTAGAACCCAAATGCGAAATATGTCACAAACAATTTGCCAATGACACCGTTCTCAAGTCCCACCGAAGGACACACACTAAAGAAAAGACTTTCCAATGTGATATTTGTAAAAAGAAATTTACGACAAAGGGAAGTATAAAAAATCATGTTCAAATTCACgccaaaaaaattaagaaataa
Protein Sequence: MSTLQFCRCCLSTDTRFCNVSDKTAEVYRVLTGLPVKLELSSQAFCYTCEYFIVRVHHFREQCLNVNNIINDLILSDDGLNYKTIKAAESEIEKPNPTQLNPVVVNCCEACEKSSASSDSADIQLDGDKDHTAADSNSEQNDEENTADVVQPGFVNIYDDVMDNVETKLSYSDNDCDKEDNVPLNRVKEEKENQEPNVDVVNGHQRGARNENNNSIESESIEHNKKYEVRPICKKDYSLDTTEYCDIKITATKSESIKDDTKKKRLNCICDYCKKPVSRKRALINHIANHGHNDLVCPVCYLRFINKQAFAIHMKTHSVERPFSCDVCNRKFKRIDRLKDHLRIHDGVKPYNCDLCDKSFLRKNSLKSHKITHSGEKKFQCTLCDRRFRCNSNLKSHFKTHTGEKPYNCDICPKRFRSKILLKHHTNTHLGAKHFACHLCDRKYYRKTHLQSHLKTHTDEKAFKCDKCDKSFVTRTRLQTHVDTHSEAKLHVCLTCGNKYKTVASLNSHLKRHINVNLIKCDVCSKLLSDKKSLEAHLRMHAGVKLFQCDYCGKKLAERGSLITHLRIHTGNKPFQCDDCKKWFFSKHVLRTHVLIHMDRKFKCAVCAKQFTFFNNMMSHMRVHTGEKPFACHLCDKKYSDNRCLKAHLRYHNDENPFECNYCGKKFRLSGSLKYHIRRHKQRSLYKCEVCDKTYSNVRSLKLHSRIHTGEKLRNCDFCDKKFTCNKSLAAHLLTHTGEKPFQCDICHEKFTYERTFRSHVISHTGENLLNCDICDEKFTSDYKFRTHLKCHVPSTGVEPKCEICHKQFANDTVLKSHRRTHTKEKTFQCDICKKKFTTKGSIKNHVQIHAKKIKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00198491;
90% Identity: iTF_00198491;
80% Identity: -