Bsom008700.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963576735.1
- Location
- OY755173.1:2324899-2346929[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-78 8.9e-74 249.8 28.4 1 297 129 406 129 409 0.89 2 2 0.43 1.9e+04 -4.1 9.5 11 159 426 467 413 483 0.42
Sequence Information
- Coding Sequence
- ATGGGGCGACGTTCCAAACTAGTGACATCAGAAGGTAGTGAAGAAGAGAGTGGAGATGCATTTACAGATGCGGATTTCGGTGATTCAGATGATGATACATTAGTAGAAAATGTTCCTGATAAAACCAAGACAGCAGTCAAAGAAACTGCTAATAAAAGTATAGCAAGCAGTAATGGTGCATCTTACTCGAATGGTGTGCACGATAATCCGATTGTGTTTCGAAGACAAATGAGTAATGGCAGTCTTAAAAACGGTGTGAGGAATGAAGTGGACGGtatcaataacaataacaaAGGTGAAAATGGATCCATCTTGTTCCGGAGGGATTCTCACGGTGACATGAATCCGTCCATCGTGGGCATCATTGGTGATCAGCACTCGCACGCAGAGCAGCGGCTAGCGGCGCGACGAGCGGCGCGGGCGGAGGCGCGCGAGATACGCATGCGCGAGCTAGAACGCCAGCAGCGAGAACAGGAGAACCATGCTGATAAAGCTTATGATATGTACTCAGAGAGTGTCAGTCGGAGGCCGGCGACCCGGCTGGCGGGGCTCAGTCCCGGCGGAGTGCACTCGCCGAGGAGGAGCTCCGAGGACTCCATTGATGATGGGTTTAACCTCAAAGATCTTAGGCACGAGTTAAAAGAAGTAGAAGAAAAGTTCCGCAAAGCGATGATTCTGAACGCGCAGTTGGACAATGACAAAGCGTCACTTGCCTACCAGTTGGAACTACTCAAAGACAGGATCGAGGAGCGGCAGGAGGAAATGGCGCAATTACAGCGCGAACACAAAGAAAAGTGCTCAGCGTACGAGCGTCTAAAACGCGAGCACGCGTCCCTAGAACTGGAACTGCGGGCGGCGCGCGACGCCATATTGGCGCGggacgcggcggcggcggcggccggcCGGGCGTTCGTGGACGCGAGGGAGGGGGGGGACTGTGACGTCACCATGCCGGCGTTGGCGTTGGTTTCCGTGGAGAATGAACAGCTGCTTAATGATGCGGGAGAGGGAACGTTAGATGTAAGATTACACGCGCTGCTATCATCAAAGCAGTCCCTCGAGTCCGAAGTTCGCAAGTTGAAGTTGCAGCTTAATGAGGAACGGTCTGCGCGACAGAACGGGGTGGCACATCATGATGATGATTATGAGAATGAATTGGAGAGTCTCCGTAAAAGCGTATCGGAAGCCAAATCCCGGGCGGCGCGGGCGGAGGCGGAAGCAGCTTTACATGGCGCGACGGCGGCCAGACTGGAAGCGCAGCTGGGGAGGAGTCGCGCCAGAGATGAGGCCAGGGATGCGGCTGAGGAGGAACTCAAACAGGAGAGACGGAGGCTGCAGCGGGAGGCGCGTGAAGCACTTAACCGGGTAGAAGAATTGGAAACAGAAAACAGTCACTTAACAAAGCGGCTAGATAAATTGAAAAACGCCAAATCACAACTACTGAAGGATCTGTGA
- Protein Sequence
- MGRRSKLVTSEGSEEESGDAFTDADFGDSDDDTLVENVPDKTKTAVKETANKSIASSNGASYSNGVHDNPIVFRRQMSNGSLKNGVRNEVDGINNNNKGENGSILFRRDSHGDMNPSIVGIIGDQHSHAEQRLAARRAARAEAREIRMRELERQQREQENHADKAYDMYSESVSRRPATRLAGLSPGGVHSPRRSSEDSIDDGFNLKDLRHELKEVEEKFRKAMILNAQLDNDKASLAYQLELLKDRIEERQEEMAQLQREHKEKCSAYERLKREHASLELELRAARDAILARDAAAAAAGRAFVDAREGGDCDVTMPALALVSVENEQLLNDAGEGTLDVRLHALLSSKQSLESEVRKLKLQLNEERSARQNGVAHHDDDYENELESLRKSVSEAKSRAARAEAEAALHGATAARLEAQLGRSRARDEARDAAEEELKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSQLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -