Bsom015550.1
Basic Information
- Insect
- Bedellia somnulentella
- Gene Symbol
- -
- Assembly
- GCA_963576735.1
- Location
- OY755178.1:8362295-8364562[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.1e-10 1e-06 29.6 0.3 4 39 16 51 15 57 0.84 2 2 0.6 8.4e+02 1.1 0.0 2 13 515 526 514 531 0.88
Sequence Information
- Coding Sequence
- ATGGAGCCTCCTCGTAAAAAACCGAGAGGACTTTGGACACTGCAACAGTTAGAAGCTGCAATGGCAGCTGTGCAAGGCAATTTAATGTCGCAACGTGCAGCAGCTGCTCGGTATTCTATCCCCAGAAGAACTTTAGTAAACCACCTCAAATCAGGTAAAGTTGAAAAACAAATAGGGCGTCGCACTATATTGACCGCAGAACAAGAAAATGAATTGGCATCAAGAATAAAGAGACTTGCTTCCGTAGGGTTCCCTTTAACTCCAAAACGTATTCGTCATCAAGCATACGTATTTTGTGAACAGAACGAAATTTGTCATAATTTTaatcaaagaaataaaatggcTGGCAAAGAttggttaaaattatttttaaagagaCATCGCGATATATCAAAGAGGAAGGTTCAGATTTTAAATCCTGGTAGAGCACAAAAGCTAAATAAAGCTATTGTCATGCATCACTTTGAagagtacaaaaaaatatacgacGAACTAGAGATCGGAGATCATCCACACCGCTTGTATAATATGGATGAAAAAGGCTGTAGACTTACTATACACAATCAACCAATGGTATTAGCTCAAAAAGGAGTGAAACGAGTACATATGGTTGCACCAGAACATGCAGAAAATGTTACAGTGGCTGCCTGCGTGAATGCACTGGGTAATCCGATACCTCCGATGATAATATTTAAAGGAAAGAGGTTGAAAGCCGAATTCAAAGATAATTTGCCAGCAGGATCGCTCGTAAAAATGGCACCAAAAGGTAGCATGACTACCGCGTTGTTCATAGATTTCATACATCACTTGGGAAAATACAAATCACCTGGTAAGTGCTTGCTAATTTTTGATGGCGCCTCCTGTCACTTAGATTATCGTATTGTGGATGCAGCTGATGAGGAAGATATCGTGTTGTATTGTTTGCCTTCAAATACAACTCACGAGCTGCAACCATTAGACAAAAGCGTGAATAAATCGTTCGAGCACCACTGGGACGAAGAAACTTTGTTGTTTTTATACCAGCACccggaaaaaaaattaaacaaagcgCGATTCAACAAAATTTTAAGCAAAGTCTGGTCAAAGTGTATGACCCACGCAAATATTGTTGCTGGGTTTAGAGCTACAGGGCTATATCCCTATAATCCGGATGCAATCGCAGAAGAAGCCTATGCACCAGCTGTCTTGACGGAAATATTTCCGGCACAAGAACTTGACGTTTCCTCGCGAACTGATCCTTGTCTGCCACAAGCTCCATCTCCTGGTTTTTCCCATTTAAACGCAGACCGAAGAACACAAGATCATACTGGCACAAATTCTGActctaatgaaacatattattGTGAAGACAACAGTCCAAGTTCACCATCTTTACTTAAACGCAACGAGTTATCTTCTCCTGTTTTAGCTAACAGAGAGATACGTTTAGTCGATTACAGTTCGACCAATTCTGAATCCTCTAATTCAAACTTGTCCACAAAACCTGGCACATCTGGAGCTGCTATAAGACGGCCAATAATTTATAGCTCTGATTATGAATCAGATGAGTCTTTTACTGAAGCGCTAGCTATGTATCAAAGGCAACTACAGTCTAGCATAAACTTATACAGATCAtcagaaaatgaaaatatagatCCATTATCCCAACACCGTACTCCCGAAAAACACATGAAAACCTCAATTTTCAACACTGATATAAGAGAAGTAAGTCACAATTCTTCGACAAGCGATGGTTCAGAAGATAACGTACCATTGATAAGCTTTAGGGATAAAAAGGATGTTAAGTCAAAGTTTCATCAGCTACTTCCAACACCAAACTTAGCTGTAGTGAAACAAAAGCCAAGACGTAAAGCGATTAATTACAAAGCCCAAGTAGTAACCAAAGatttatttaatcaaaaaaatatagaaaaaccaAAACAGAAGGAGCAGCAAAAGCGGcagaataaagaaaagaaaccTCAACAAAACAAAGGAGATAAAAAAACAAGTCAGAcgaaaaaaaaagacaatcgAAAAGATAAGGCCAAACAATTTGAAAATGGCTCTGATGAAAAGAGTTTTGAAGACATGCGACAATGCCCAATGTGCCAAAGATGGTTCCATGAACAATGTTTGGGCTTAACAAAAGATGATGTTGATTTTGAATGTCCTAAGTGTGATTAG
- Protein Sequence
- MEPPRKKPRGLWTLQQLEAAMAAVQGNLMSQRAAAARYSIPRRTLVNHLKSGKVEKQIGRRTILTAEQENELASRIKRLASVGFPLTPKRIRHQAYVFCEQNEICHNFNQRNKMAGKDWLKLFLKRHRDISKRKVQILNPGRAQKLNKAIVMHHFEEYKKIYDELEIGDHPHRLYNMDEKGCRLTIHNQPMVLAQKGVKRVHMVAPEHAENVTVAACVNALGNPIPPMIIFKGKRLKAEFKDNLPAGSLVKMAPKGSMTTALFIDFIHHLGKYKSPGKCLLIFDGASCHLDYRIVDAADEEDIVLYCLPSNTTHELQPLDKSVNKSFEHHWDEETLLFLYQHPEKKLNKARFNKILSKVWSKCMTHANIVAGFRATGLYPYNPDAIAEEAYAPAVLTEIFPAQELDVSSRTDPCLPQAPSPGFSHLNADRRTQDHTGTNSDSNETYYCEDNSPSSPSLLKRNELSSPVLANREIRLVDYSSTNSESSNSNLSTKPGTSGAAIRRPIIYSSDYESDESFTEALAMYQRQLQSSINLYRSSENENIDPLSQHRTPEKHMKTSIFNTDIREVSHNSSTSDGSEDNVPLISFRDKKDVKSKFHQLLPTPNLAVVKQKPRRKAINYKAQVVTKDLFNQKNIEKPKQKEQQKRQNKEKKPQQNKGDKKTSQTKKKDNRKDKAKQFENGSDEKSFEDMRQCPMCQRWFHEQCLGLTKDDVDFECPKCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00198056;
- 90% Identity
- iTF_00198054;
- 80% Identity
- -