Bphi012265.4


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Battus philenor
Gene Symbol
-
Assembly
GCA_028537555.1
Location
JAQMYT010000015.1:7795328-7809495[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 8.4e-05 0.008 17.1 0.1 3 23 130 150 129 150 0.97
2 19 7.6e-07 7.2e-05 23.6 1.2 1 23 156 178 156 178 0.99
3 19 4.7e-06 0.00045 21.1 2.7 1 23 184 206 184 206 0.99
4 19 4.2e-06 0.0004 21.2 2.4 1 23 221 243 221 243 0.98
5 19 0.00014 0.013 16.5 0.6 1 23 258 280 258 280 0.98
6 19 3.7e-05 0.0035 18.3 2.6 1 23 295 317 295 317 0.98
7 19 3e-07 2.9e-05 24.8 1.5 1 23 332 354 332 354 0.99
8 19 0.00013 0.013 16.5 2.8 1 23 360 382 360 382 0.98
9 19 1.3e-05 0.0012 19.7 0.3 1 23 389 411 389 411 0.99
10 19 9.4e-06 0.0009 20.1 2.1 1 23 417 439 417 439 0.99
11 19 0.03 2.9 9.1 1.8 1 23 446 468 446 468 0.98
12 19 5.1e-07 4.9e-05 24.1 2.3 1 23 474 496 474 496 0.99
13 19 0.035 3.4 8.9 1.8 1 23 503 525 503 525 0.98
14 19 2.1e-06 0.0002 22.2 1.5 1 23 531 553 531 553 0.99
15 19 0.00039 0.038 15.0 0.7 1 23 560 582 560 582 0.99
16 19 2.3e-06 0.00022 22.1 1.9 1 23 588 610 588 610 0.98
17 19 0.0017 0.16 13.0 0.3 1 20 616 635 616 638 0.93
18 19 3.1e-05 0.003 18.5 1.3 2 23 645 666 644 666 0.96
19 19 3e-06 0.00028 21.7 1.4 1 23 672 695 672 695 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAACAGATCAAAGCAGAACCTATGAGTTTCTACACCTCCCACTCACATGTGCACTCTGGCCCTCCTACAATAGTCCGTTCAGACTCAAATCATGGTGTATTAAACATGAACCAGCATCATCACCAAGAGGATTCAAAGGATAGTCTAATAGTACAACAACAAGTACAACACCAGGAGCTGCTGGAACAGCATCAACAACAACAGGAATTACAAGGACAAGATGATGATTTAAGCTTTAAAGGGATGGATGACGAAGGAGTTGAAATGGATATGGATGGTCGGCAGTGTTCTCAGGGTATGGGAGTAGATTTGGGATCAGTTCAAACTAAAATGGAGGTTTCCAATGGTGGACAACTACCAAGATCTAAACCACAAGCCTGTAAGGTTTGTGGCAAAGTTCTATCATCGGCATCTTCATATTATGTGCACATGAAGTTACACTCCGGAAATAAGCCTTTTCAGTGCACGgtttgtgacgcggctttttgtcgcaagccgtacctagaagtgcacatgcgaacgcacactggagagagaccgttccaatgcgacctctgtcttaagcgattcacgcagaagtccagtctaaatacgcacaaacgcgtccataccgATGAGCACATGCGGGCGTTGTTGGTGAAGgagcggccctacaggtgcgagctctgtcagatgcgcttcacgcagagctccagcctcaaccggcacaagaaaatacacacggAGGAACACAAGCGCGCGCTGCTGGCTAAGGAACGTCCCTACCAGTGCGGCGTGTGCTTTGTGCGATTCACCCAGAAATCAAGTTTGGGCCGGCACGGGAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTgcggccgtaccagtgccacatctgttttatccgcttcactcagaagtccagcctgggcCGCCATGGAAAGATACACACTGAGGAGCACATCCAATCGCTGATCAACAAAGTgcgcccatatcagtgcgacatctgtgacaagcggttcacgcagaagtccagccttggcactcataagcgtatacacaccggcgagcggccgttccagtgcaccgtctgcctcaagtccttcacgcagaagtgcgcgctcaatttgcacgaaaaaatacatacggtgcaagggcgtccatatacgtgcgggctatgcccggcggccttcgcacgccgcccgcacctggacactcacatgcgcacgcacacaggcgagcggccctatcagtgcgacgcctgtctcaagcgcttcacgcagaagtccagcctcaatatacataaacggacgcacacagTCCagggcagaccgttccagtgcctgtcgtgccccgccgccttcacctgcaagcaatacctggagatacacacgcgcacgcacaccggcgagcggccctatcagtgcgacatctgcctgaagcgcttcacgcagaagtccagtctcaacatccacaaacgaacgcactcagtgcagggtcggccgttccagtgcctccagtgcccggctgccttcacttgcaagcagtacctcgagattcacaaccgcacgcacaccggcgagcggccctatcagtgcgacgtgtgcctcaagagattcgctcaaaagtctacactcaacatacacaaacgaacgcacacagtgcaagggcggccgtatcaatgtatggagtgtccggctgcgttcacttgcaagccgtacctggagattcacatgcgcacccacaccggcgagcgtccgttcgagtgcgatgtctgttacaaacgcttcacgcagaaatcgacgctcaacattcacaagcgaatccacacggGTGAACGTCCATATGCATGTGATATTTGTCAGAAAAGATTTGCTGTGAAAAGTTACGTAACAGCTCATAGATGGTCCCACGTAGCTGATAAGCCACTAAACTGCGAGCGGTGCTCGATGACGTTCACGTCCAAGTCGCAGTTCGCGCTTCATATCCGCACACACTCCGCCACTTCCTGCTACGAGTGCAGTGTCTGCGGACGCACCTTCGTGCGCGACAGCTATCTCATACGGCATCATAATCGTGTACATCGAGAGAACCACAGCAACATGTCTGCCAACAGCATCGGCACCATGACTGCTACCAACACGAACAACTCCAATAGCAATTTCGACTCTCCCGGCGTTTGTGACTTAAGTTTTGTGCCGATGGTCAACCGCTACATGACGTCACAGGGCACCCAGGTGTCTATGCAGGATACAAGCAAAATGTCATCTATGTCTCCTCAGTCCATTGCTTCCATTTCGTCGCCCCCTCCACCTCACACGCCCACACCGCAGCCGCAACTGTCCGGTCAGATGCGTCTCACGGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHSHVHSGPPTIVRSDSNHGVLNMNQHHHQEDSKDSLIVQQQVQHQELLEQHQQQQELQGQDDDLSFKGMDDEGVEMDMDGRQCSQGMGVDLGSVQTKMEVSNGGQLPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALLVKERPYRCELCQMRFTQSSSLNRHKKIHTEEHKRALLAKERPYQCGVCFVRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFIRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPYTCGLCPAAFARRPHLDTHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCERCSMTFTSKSQFALHIRTHSATSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNMSANSIGTMTATNTNNSNSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSSMSPQSIASISSPPPPHTPTPQPQLSGQMRLTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_00204510;
80% Identity
-