Basic Information

Insect: Barypeithes pellucidus
Gene Symbol: -
Assembly: GCA_963991005.1
Location: OZ022559.1:25307734-25321376[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.053 8.3e+02 1.6 0.0 23 47 210 234 205 241 0.87

2 5 0.21 3.2e+03 -0.3 0.0 21 52 236 267 233 267 0.81

3 5 9.3e-05 1.5 10.4 0.0 21 44 264 287 261 291 0.93

4 5 0.055 8.5e+02 1.5 0.1 23 43 322 342 315 351 0.87

5 5 8.6e-06 0.13 13.7 0.4 24 53 351 380 340 381 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.053	8.3e+02	1.6	0.0	23	47	210	234	205	241	0.87
2	5	0.21	3.2e+03	-0.3	0.0	21	52	236	267	233	267	0.81
3	5	9.3e-05	1.5	10.4	0.0	21	44	264	287	261	291	0.93
4	5	0.055	8.5e+02	1.5	0.1	23	43	322	342	315	351	0.87
5	5	8.6e-06	0.13	13.7	0.4	24	53	351	380	340	381	0.84

Sequence Information

Coding Sequence: ATGCAAGAGAAGGATGGTTTTTGCTTACAGTGTCAAAGGCCTTTATCATTGACATCTAATCGATTGGTGCAAGATTCATGTGGACATAAAAAATGCCGTTTGTGTCTTTTAGATGATGTGGAAAACTGCAAACAATGTTTTGGTTCGGTCATTTTAAATGAACAAAATGGAGAAACAATAGATAGTATACCTAAGATAACTGATAATCATACCGCTGTCATCCAATGTAATGGAAAAGCAAGACTTAACTGTGATAGAATCTTGGATGAGGTCATTGAGAGACCAAGCGATCCTTCAGTTTCCAatgataaaaaactaaacatcaatttaattaatcgTGCCAATAAGTCAGTGATAAGGAAAcaagaaaataaagtaaaaatcaaaAAGTTTAAGGAAAAAGGGGGGAAAAGGAAGTTAATTAATATCCCCTCTCACATAATTCTAAAGTCAGATCCAATTTCCTACCTGTGTTCTATATGTAACAAGACTTTTTATACAAGGTCTCATGTTAAATATCATCAGTATTGTGCTGGAGaagtaAAGCCATACAAATGCAAAGTGTGTGAAaaggaatttattttaaaagcccaGCTCCAAATTCATATGTACAAACATGACAATGTGAAGCCGTTCAACTGTAGTATCTGCCAAAAATCATTCGGCGAGAAAACCAAACTTTCGCGGCACATGGTGTTGCATTCGTCAGACAAAAACTATATTTGCCCTGATTGTGCAAAGGCATTTAAAAGCAAAGAATCTTTAAGAATTCACTGTTTGATTCATAAAGTTGAAAAACCATTTGCTTGTACAATTTGCTCGACAAAGTTTAACAATTCATCGAATTTAAAGAAACATTTAGTTTCACATTCAGatgAAAAAGCTCATATGTGTGATCAATGTGGAAGGAGGTTCAAGTTAAAGTGGGCCTTATCGGTACATAGGAAGTCCCATCTAAGAGTGAGGCCTCATGCTTGTAATGTGTGCTTTAGGAATTTCGTTAACTTCAAAGATTTACAGAGGCATTCTTTGGTGCATTcagAATCAAAAGGATTCACTTGCGGCATCTGTCACTCAAGTTTTCGGCGCAAAGACAACCTACACCGCCATATGAAGAACACACACCCAGGTAAGAAGGGTGAGGTAATAAAGAATGACTTGAAAGTCGCAGAATTACCAAACAAATCCGTAGTCATTGATAATCCAAATGCAATAAAGGTGATAACCGCTTCGCCGgctataacaaaaaatatagccGAAGCAGTGGTGGCGCCACCACAGCAACATACTGCTAAATCTACTGATTCTAGGCCGACCGGATCTGTCATCAACGGACCAATCAAGCTCGCGTTTAAGACGCCGGCTTTCAAGAGCCATTACAATATTGCGAGagACTGCGACTATGTACCACCTGCTCAAATTACGAAGTCTCTCCCACTAGCAGAATCAGTAGATATAGCGCAGAAAATATCGTCTAGTGCTGATCCTCTTATAGTGAGTCTAAACGTTGACGAGCGCACATCTAACGaaatatgtcaaaatatacTCTCCGTGCCGAGTAAAAGTCCAGAGGAACCTCAGTTACAACCTATAGTACCAGTGCCAACTCCTCAACAACAAAATCTTGCTTCATTCTCAAGTACGTTCCATTATGAAACTTCGTTTCAATATGGAAAACACGCgatgattaaaaatataaagtttaaaGTGCCGCAACAATATACGAACTTATTTAAACAAAGTACTAATAAGGTTACTGATAACGTAAGTGATAAAGACTATGATCATAAAGAACTAACCGTGTCTTCAGCGGAGTCTAAAGTGTATTCGGAGCTAAAACCAGTGATGAAGAAAAGTGTTATAGTGAATAATAGTAATCTTAATCAAGCCAGTGATATTCACTGGCGAAGGAGAACTTCACAGAATCTCGTGCTTAAGAATTAA
Protein Sequence: MQEKDGFCLQCQRPLSLTSNRLVQDSCGHKKCRLCLLDDVENCKQCFGSVILNEQNGETIDSIPKITDNHTAVIQCNGKARLNCDRILDEVIERPSDPSVSNDKKLNINLINRANKSVIRKQENKVKIKKFKEKGGKRKLINIPSHIILKSDPISYLCSICNKTFYTRSHVKYHQYCAGEVKPYKCKVCEKEFILKAQLQIHMYKHDNVKPFNCSICQKSFGEKTKLSRHMVLHSSDKNYICPDCAKAFKSKESLRIHCLIHKVEKPFACTICSTKFNNSSNLKKHLVSHSDEKAHMCDQCGRRFKLKWALSVHRKSHLRVRPHACNVCFRNFVNFKDLQRHSLVHSESKGFTCGICHSSFRRKDNLHRHMKNTHPGKKGEVIKNDLKVAELPNKSVVIDNPNAIKVITASPAITKNIAEAVVAPPQQHTAKSTDSRPTGSVINGPIKLAFKTPAFKSHYNIARDCDYVPPAQITKSLPLAESVDIAQKISSSADPLIVSLNVDERTSNEICQNILSVPSKSPEEPQLQPIVPVPTPQQQNLASFSSTFHYETSFQYGKHAMIKNIKFKVPQQYTNLFKQSTNKVTDNVSDKDYDHKELTVSSAESKVYSELKPVMKKSVIVNNSNLNQASDIHWRRRTSQNLVLKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01239477;
90% Identity: iTF_00196682;
80% Identity: iTF_00196682;