Bpel003707.1
Basic Information
- Insect
- Barypeithes pellucidus
- Gene Symbol
- -
- Assembly
- GCA_963991005.1
- Location
- OZ022556.1:43400916-43401680[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0024 37 5.9 0.0 20 32 19 31 12 37 0.88 2 4 0.00017 2.6 9.6 0.0 21 50 48 77 41 79 0.87 3 4 0.00014 2.2 9.8 0.0 21 52 76 107 74 108 0.94 4 4 0.0077 1.2e+02 4.2 0.0 22 46 134 158 130 166 0.83
Sequence Information
- Coding Sequence
- ATGGCTTTTCCGTATAAATCGGCTTACGAATGTCATAGAAACACGCATTTGGACAAATCCGAGCAGCCGTATCCGTGCGACATATGCGGTGCTAGATTTGCTTTAAAATCGATTATGGTAACTCATCGTATTATCCATTTTGGAGAGAAGCCACACGCTTGCACCGTGTGTGACTTGAGATTCACTCAGaaatcaaatttaaagaaacacgTTCTCCTACATTCCGGCGAAAAACCGTTTACTTGCGACGTctgtaaaaagaaattttttacgAAGCACACGTTACAGTCACACTTAGAAACGCATTATGGGGCTAAACCGTGGAAGTGCAATGAGTGTGATGAAGGTTTTAGGCACAAGGCTCGATTGGAAGTCCACAAGTTGATGGTTCATAAGGGAAAGGAACCTTTTAAGTGTGATGTTTGTCAGGCACTTTTCGCTCACAGTTGGACTCTTAAAACGCACAGGCAAACACACGAGGGACAGAAGCCGTTCCAATGCGAAGTATGCTGTAAAAGATTTGTTAAACAATGGATTCTTGACAGTCATAGGCGAATACATACTGGCGATTATCGTTTTGAGTGTCAAATATGTGGTCGTCGGTATGTTGATAAGGCTAAGTTAAACTTTCACCAAAAACAGAGATGCTTAAATCCAAAAGTTCCCCGGACAAAGATTTTTAGAAATCGAACGGCAGTAAACGCTGGGGGTATAGAAGGTGTGCAGGAGTTTGTAGAAAACGTATCTACCTCTGTTATAGTCTGA
- Protein Sequence
- MAFPYKSAYECHRNTHLDKSEQPYPCDICGARFALKSIMVTHRIIHFGEKPHACTVCDLRFTQKSNLKKHVLLHSGEKPFTCDVCKKKFFTKHTLQSHLETHYGAKPWKCNECDEGFRHKARLEVHKLMVHKGKEPFKCDVCQALFAHSWTLKTHRQTHEGQKPFQCEVCCKRFVKQWILDSHRRIHTGDYRFECQICGRRYVDKAKLNFHQKQRCLNPKVPRTKIFRNRTAVNAGGIEGVQEFVENVSTSVIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00444480;
- 90% Identity
- iTF_00196718;
- 80% Identity
- iTF_00196718;