Basic Information

Insect: Barypeithes pellucidus
Gene Symbol: -
Assembly: GCA_963991005.1
Location: OZ022557.1:73189606-73209699[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0033 0.3 13.0 1.6 2 23 140 161 139 161 0.97

2 16 0.00012 0.011 17.5 2.6 2 23 168 189 168 189 0.97

3 16 0.0005 0.044 15.6 0.2 2 23 197 218 196 218 0.97

4 16 0.00037 0.033 16.0 2.6 1 23 340 362 340 362 0.99

5 16 1.4e-05 0.0013 20.4 8.2 2 23 369 390 369 390 0.98

6 16 0.00047 0.042 15.6 3.0 2 23 407 429 407 429 0.96

7 16 0.00041 0.037 15.8 4.4 1 23 505 527 505 527 0.97

8 16 0.0014 0.13 14.1 1.0 1 23 533 556 533 556 0.95

9 16 3.5e-05 0.0031 19.2 2.5 1 23 561 583 561 583 0.98

10 16 3.9e-05 0.0035 19.0 4.3 1 23 592 614 592 614 0.98

11 16 9.5e-06 0.00085 21.0 1.0 1 23 621 643 621 643 0.93

12 16 3.4e-06 0.0003 22.4 1.6 3 23 655 675 653 675 0.96

13 16 0.00011 0.0097 17.6 4.5 1 23 681 703 681 703 0.99

14 16 6.6e-05 0.0059 18.3 1.7 1 23 709 731 709 731 0.96

15 16 1e-06 9.1e-05 24.0 0.4 1 23 737 759 737 759 0.99

16 16 0.00065 0.058 15.2 0.1 1 22 765 786 765 789 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0033	0.3	13.0	1.6	2	23	140	161	139	161	0.97
2	16	0.00012	0.011	17.5	2.6	2	23	168	189	168	189	0.97
3	16	0.0005	0.044	15.6	0.2	2	23	197	218	196	218	0.97
4	16	0.00037	0.033	16.0	2.6	1	23	340	362	340	362	0.99
5	16	1.4e-05	0.0013	20.4	8.2	2	23	369	390	369	390	0.98
6	16	0.00047	0.042	15.6	3.0	2	23	407	429	407	429	0.96
7	16	0.00041	0.037	15.8	4.4	1	23	505	527	505	527	0.97
8	16	0.0014	0.13	14.1	1.0	1	23	533	556	533	556	0.95
9	16	3.5e-05	0.0031	19.2	2.5	1	23	561	583	561	583	0.98
10	16	3.9e-05	0.0035	19.0	4.3	1	23	592	614	592	614	0.98
11	16	9.5e-06	0.00085	21.0	1.0	1	23	621	643	621	643	0.93
12	16	3.4e-06	0.0003	22.4	1.6	3	23	655	675	653	675	0.96
13	16	0.00011	0.0097	17.6	4.5	1	23	681	703	681	703	0.99
14	16	6.6e-05	0.0059	18.3	1.7	1	23	709	731	709	731	0.96
15	16	1e-06	9.1e-05	24.0	0.4	1	23	737	759	737	759	0.99
16	16	0.00065	0.058	15.2	0.1	1	22	765	786	765	789	0.91

Sequence Information

Coding Sequence: aTGATTCCTGAAGATATTCAGTTAATGATAGATAAAATATGTCGCTCTTGCATGTGTGAGAGTGAAGAAATGAATAATGTCTTCGAGAAAACGGCTGGTCCAGCAGACGATACAATGCTTCTCTCAGATATGCTGATGGCTTGTGCTTCAGtagaggtGATAACAGGCGATGGCTTGCCGTATTTACTTTGCCATACATGCGAGGGGAAGTTAAGCATGGCCTTTGAGTTCAAGCAACAGTGTGAAAAGTCGGATACAGCCTTAAGGGAACTTACCAATCAGCAGGATGGTAAAGCAAATAAAGAAGAGGACATTATTATTCAGCCAGACGTGCATGAGGGATTGTTTGATGAGGATGATGATGATTTGCCTTTGGCCAAACGCAAACGTGGCGCAAGAGATTCACCTGCTGATCTAACCTGCACTTATTGCATGAAAACTCTTTCCACTAAAAAGGGGTTAAGGGTGCATTTACGTCAGCACACAGGCGATGGAATGAGatATTGTCCAATATGCCCTTCAAAATACACAAGAACCAACCATCTAATGAGGCACATGAAAACGCACGATAGACTTGGGAAAAAGCAgccatgcaaaatatgtgctcAAAAGTTTTCTGTATCTGCTGATCTTTATAACCATATGAAAGTCCACATAGAAGCGattgagaagaaaacaaaaaaggaattggacaaagaaaaaattattatcgaaGTTAAGAGAGAAAAAGATGATGATTTtaaaatcgaagaaacgaagcTTGGTGATCAAAAGGATGAGAATAACACAGTCGAAGCACAGGACGACAAACTCGATTTAATGGAACTTGTTACGTCAAAGGATCTTGATGCCATGGACATTCCACTCAGTCAGTTTCCATTTAGCGATGACGACGATAATTTTGTTGACAATGAGGACGGGTTCGGGAATAACGAAGATGATAAGGATGAAGATTTTGTCGTAGTGAAAGAAAAGAAACGAAGAGGAAGGCCACCCGGAAAGAAGGATGGTACTCTTTATGAATGTAAAGAATGCAGCAAAATACTTACCACTTATTGTGGTTTGAGAATACATATGAGAAGGCATACTGGCTCAGATCTGGCAAAGTGCAAGCACTGCGATAAGTCATTTACAAAAATGAGTCACCTAAATAGGCATCTACGTTCTCATGGAATTATCAAAGGAAAAAGCAAAATTAAAGGAGATAAAAAGACTAGAGAGTGTGAATTCTGTGATCGTAAGTTTAAATACAAGAAAAGTTTTGCCCATCACATGCAGGTTGAACACGGTATGTCGGATGTTGACAGCGAGGCAGAAAAGACTTTTGATGGAATAGATGCAACTCAGTATGAAAATGCAGACAATGTAGAAAATGGAGatacaaACAATGAAAACTTTCAAAATAATGGGGAGCCCTTAGATCCGAGTTTTCCAGGTATAGAAAAACTCGAACCATCCGACGGATTGGATTTGCCCTTGGACGACCTGTCAGCAAGAAGAAAAATTAAGGTTCATACTTGCCATGTATGTCAAGCGGAGTTTGCACGTGCTAATCACCTGACTAGGCATATGACATTACATAGAGCGGTGCTAACACATAAATGTGATAGGTGCGATCAGgCATTCTTTACCGAGGAAATGCTTAAAGCACACATAGAGCAGCAACATATTAATAAGCCTTATGTATGTACCACATGTAACAAACAATTTAGTAGAGGTGAACATCTTATAAGGCATCTAAAACTTCACCAAGAAGTCACTGATGAAGGTCAACATAAATGTTCCATTTGTGAATCTGTATTTTCGAGGTCGGATCACTTAGCGAGACATACAAAAACCCATCTGATGCAGGATAAAAGGCATGTGTGTATCGAGTGTGGTAAAGCATTTAATAGGTTAGATAATTTGAAAACTCACCAAAGAATACACACCGGGCTTAAGGATAATTCAAAATTACATTTGTGTGTTTATTGCGGTAAAGAATTTAATAATTCCAGTAATATGattgTGCATATGAGACGGCATACTGGCGAAAGACCGTACAAATGTAATGAATGTGGAAAAGGTTTTCCACGGTCGCATGACCTTAAATGTCACGAAAGGACACATTCAGGAGAAAAACCCTATTTATGTACTTTGTGTGGAAAGTCGTTTAACAAAAGTAACAAATTGTTGCGACACAGCAGAGTGCACACGGGCGAACGCCCTTACGTCTGCAACATATGTTCCAGAGCGTTTACTCAGTCGAACGACTTGGCGTTACACATGCGCAGACACACTGGGGCGCGTCCTTACGCTTGCGGTGTATGCCCGGCTAGATTTATTCAATCTGGCCAGTTAAAGAACCACAGGAGACAGACTGGTCATTGGATGGAGACGCTGCCTGATTTGAAGGGCGGGCacaggGTGGAACCAGTGACGTCAGCAGTTGAACCAATGCCAATAAGATTTAAAACATTCGGTAAGAACCGAATGGTTAAACTAGAAGAAGGTATTCAACAAGGAGATCACCAGCAACTCCAAAACATGCCCCAACAAGTATTAGATCAGCCTCAAATAGCACAATTGCAGACTCAACCTCAGAGAATATTAATGGGTATCATGGgcaacattaaaatacaaaatgacGGGCAACCGTTAattattgacagtaataaaatagTGGAACTGCCCGGTGGCCAGTTGGGCATAGTGACATTACCGACGGTAATCCAAGGGGCCGACGGTgaggaaattaaattaaaaacggaAATAGGTAGTTTTAATATATCCCAAGTAGAGGAGGACTTGGACAAGCACGAGGTAGTTAGTACCTCGAGTACCTTCCATGAAGGCGATTCGGTGGTGTATTCGACAGTACAAACCTCAACGACGTATACTTCAGCGGAGAACTTTACATTTCAAACGTTTAATTAG
Protein Sequence: MIPEDIQLMIDKICRSCMCESEEMNNVFEKTAGPADDTMLLSDMLMACASVEVITGDGLPYLLCHTCEGKLSMAFEFKQQCEKSDTALRELTNQQDGKANKEEDIIIQPDVHEGLFDEDDDDLPLAKRKRGARDSPADLTCTYCMKTLSTKKGLRVHLRQHTGDGMRYCPICPSKYTRTNHLMRHMKTHDRLGKKQPCKICAQKFSVSADLYNHMKVHIEAIEKKTKKELDKEKIIIEVKREKDDDFKIEETKLGDQKDENNTVEAQDDKLDLMELVTSKDLDAMDIPLSQFPFSDDDDNFVDNEDGFGNNEDDKDEDFVVVKEKKRRGRPPGKKDGTLYECKECSKILTTYCGLRIHMRRHTGSDLAKCKHCDKSFTKMSHLNRHLRSHGIIKGKSKIKGDKKTRECEFCDRKFKYKKSFAHHMQVEHGMSDVDSEAEKTFDGIDATQYENADNVENGDTNNENFQNNGEPLDPSFPGIEKLEPSDGLDLPLDDLSARRKIKVHTCHVCQAEFARANHLTRHMTLHRAVLTHKCDRCDQAFFTEEMLKAHIEQQHINKPYVCTTCNKQFSRGEHLIRHLKLHQEVTDEGQHKCSICESVFSRSDHLARHTKTHLMQDKRHVCIECGKAFNRLDNLKTHQRIHTGLKDNSKLHLCVYCGKEFNNSSNMIVHMRRHTGERPYKCNECGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCNICSRAFTQSNDLALHMRRHTGARPYACGVCPARFIQSGQLKNHRRQTGHWMETLPDLKGGHRVEPVTSAVEPMPIRFKTFGKNRMVKLEEGIQQGDHQQLQNMPQQVLDQPQIAQLQTQPQRILMGIMGNIKIQNDGQPLIIDSNKIVELPGGQLGIVTLPTVIQGADGEEIKLKTEIGSFNISQVEEDLDKHEVVSTSSTFHEGDSVVYSTVQTSTTYTSAENFTFQTFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00444380;
90% Identity: -
80% Identity: -