Basic Information

Insect: Barypeithes pellucidus
Gene Symbol: ubtf-b_1
Assembly: GCA_963991005.1
Location: OZ022566.1:14656231-14662437[-]

Transcription Factor Domain

TF Family: HMG
Domain: HMG_box domain
PFAM: PF00505
TF Group: Other Alpha-Helix Group
Description: High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 7.8 1.4e+04 -2.0 0.5 16 47 271 304 269 322 0.74

2 6 3.8e-19 6.7e-16 59.8 6.1 1 68 496 563 496 564 0.98

3 6 1.5e-07 0.00026 22.7 3.8 1 68 587 652 587 653 0.90

4 6 0.00014 0.24 13.2 1.5 35 68 717 750 707 751 0.94

5 6 7.7 1.3e+04 -2.0 0.0 2 16 803 817 802 822 0.79

6 6 1.1e-05 0.02 16.7 0.4 38 66 824 852 820 854 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	7.8	1.4e+04	-2.0	0.5	16	47	271	304	269	322	0.74
2	6	3.8e-19	6.7e-16	59.8	6.1	1	68	496	563	496	564	0.98
3	6	1.5e-07	0.00026	22.7	3.8	1	68	587	652	587	653	0.90
4	6	0.00014	0.24	13.2	1.5	35	68	717	750	707	751	0.94
5	6	7.7	1.3e+04	-2.0	0.0	2	16	803	817	802	822	0.79
6	6	1.1e-05	0.02	16.7	0.4	38	66	824	852	820	854	0.92

Sequence Information

Coding Sequence: atgaaAAGAAAGCGACCGCTTCTGGAGACTGTAGAATTAGAGGAGCCTTCCATTGTTAAGAAGCGGAAATCTCGATCTAAACGCAACGAAGTTCTAACCCTTGAAACAGGCACGAGCAAGCAAGATGAGGACGTTCAAGTACGTGGTAAAAAGGAAATTCAGACAGTGAGAAAGTCCAGGAAGAAAGGGAAAAAGGCTTTGGTACAAAGTGAAGAAAGTGATGATGTTTTGACTAGTGCTCCTTTACAACCAGGACCCTCATCATCCacagaaaatttacaaaaacggAAAAGAAAGTCCAAGGGTGACATCAACCAAAACGGCGATATAAGTGACAATGTAGGAATcttaaaaaatactgaaaattcATCTAatataagtaaaataaaaaagaagaatGGTTTACAAAGACGTGAAGCTTCTGAGTCGCCTTCCGATTTTCAACCACTGGGACAGTTATTAAAGAAAGCTGAAGTgctgaaaaagaaaaatgcaaaGCGAGGACAAATTAAATATAAGGAAGTTAGTGTTGAAGCAGAAACTCCTAGACTTATAAACAAGAGGTATACAAAAAAAGCTGTTACCCTCGACCCAAGGGCGATTGACAATGAAAATGCAGAACAAGGACCGGTACAAAACACAGCAGTAAAAGAGAAAGTAGACACTAAACATGTAGGAAAGTTGTCAAGAATGAAGACACATCTGCAAAAAGTTGCACAATATCAAGAACCAGCGAGTCAAGAACCAGATATTCTTCCAAAAAGACCCAAAAAGAAAGTTAGAATAGATGAAACGgaaagtttgaaaataaaaaaagagcTGGCAGACACAGAACCTCATTTTTCCGTAAGAGAGCTGCCtgctaaaattataaaatcaaaattaaataaaaacatgacAGAGGAAGTGAAAGTTTCACCTTTGACAGTTCAAGCCtcaaagaaagaaaaaaagaaccttaaaaatattgaaattagcAAACTGGAAATAAAAGTTGAGGAACCTGAGGATGAGGagtatattattaaaacagAGGAACTTAAAATTGAAGAAGATGATGTTTTCAATGAAATTAATGCAACTAGTAATTCGGAAGATTCTGATTTGGAGGTTTATTATATCAATAAGAATGCAGAAAAGGAAGCAAAGAAAAGGGACAAGTTACTGATGCCAAAAAAACATTCCATTTTGATGCCCAAAGAGGATCAACTCGTACTGGTTCAAAGAATACAAGATGTGATTCCTGAAGGAGATTCCAAGAGTTATAAATATCGACTCCAAAAATTAGAGTGGAACAAAgtggcatttaaaaattacccacTAGAAGACTGCCAAAAAGTATGGGGCCAGTTACTTAAAAAAGTACGTCACTATCGGTTACTTGCTGAACTTACCCATGACATTAAAACTGTGATTGAGTGTAATGATTTACAACTAACAAAGCCCAGAGGCTCTAAGAATGCCAATAAGAAGCATCCAGATATGCCTAAAAGACCTCTTACGTCATATTTTCTCTATTATATTAGGAAAAGGgataaaatagcaaaagaacgGCCAGAACTTGACACGctggaacttaataaatatataagtgAAAAATACCAGAATTTACCACTGgataaaaaacaaaagtatGAAGATCTAGCAGCAAAAAACAGGGAGGAATACAAAAGACAAATGGAGGAATTTTAtggaaaacatCCAGAAATGCGTAAAGTCATTGTAAAGAGGCCGAGGAAGGAAAAGAAACAGAAACCACCTAAAAGACCTGATAATCCCTACCGACTATTTATGCAGTCAGAATTAAGTCGGGAAGAAATAGCCGACGAAGACAAAGCAGAATTTAAAGAAGTGTGTCGCGAGAAGTGGCGACAAATGTCCGATGCCAAAAAACTTGGATGGATCAATCTTGCCGAAGAACAGCTTCAAAAGTATGAAGAAGAGTTGAAGGAATATATGGCAATGCATCCCGAATTCACAGCCAAACAACAACCTAAACCATTCTTGTCTCGAGAAGAAATTAATCTGAAAGATAAACTTGCAGGCAAGCCTAAAAAACCACCAGGCACAGCTTATGGTTTATTTATAAGCCTGACATTACAAGGTAACGAAATTGTGAATATTCCACCCAAGGAAAGATGGGTTTATACATCAGCAAAATGGAAAGCTATGACTGAAGATGAGCGAGATCAGTACAAACAGCTGTTAGCACAAGTGCATGAACAATATGACGCAGACTTTAAGGCATATTTGGAATCATTGCCGGAAGACAAGAGACAGGAGGAAATTCTGCGCAATCTTCCCAAGAAACGAAAAAATGCGGCGTCTACAAGTAAAGCTCAGCAGTCAAGACGCAAGAATGTAGCATCTACTAGTAATACCAAACCGAAACCTCAAAACCCCATTCCTCCCCCAAGatccgctttcaaatatttttcggaaaaatatcgAGGGGAAAATCCAAAAGATGCGTGGAAGAATTTATCGCCCGTTGAGAAACAAAAATATGAGAAAGATCTAAGCgttttaaaagacaaatatataaaacaatttGAATCGTTTTTAAAAGGATTGTCCAAAGACGAGTTAGCTGCGTTCTGCGCCAATAGAAATGCGCGAACTGAAGACTATAGCAGCTCGGATGACACAGAGACGGAATCGGAACATGGCGATAATGATGACTCTTCTGACGATAGCTCGGACAGTTCACAATCTGACAATGAGTCTGATGAAAATTAG
Protein Sequence: MKRKRPLLETVELEEPSIVKKRKSRSKRNEVLTLETGTSKQDEDVQVRGKKEIQTVRKSRKKGKKALVQSEESDDVLTSAPLQPGPSSSTENLQKRKRKSKGDINQNGDISDNVGILKNTENSSNISKIKKKNGLQRREASESPSDFQPLGQLLKKAEVLKKKNAKRGQIKYKEVSVEAETPRLINKRYTKKAVTLDPRAIDNENAEQGPVQNTAVKEKVDTKHVGKLSRMKTHLQKVAQYQEPASQEPDILPKRPKKKVRIDETESLKIKKELADTEPHFSVRELPAKIIKSKLNKNMTEEVKVSPLTVQASKKEKKNLKNIEISKLEIKVEEPEDEEYIIKTEELKIEEDDVFNEINATSNSEDSDLEVYYINKNAEKEAKKRDKLLMPKKHSILMPKEDQLVLVQRIQDVIPEGDSKSYKYRLQKLEWNKVAFKNYPLEDCQKVWGQLLKKVRHYRLLAELTHDIKTVIECNDLQLTKPRGSKNANKKHPDMPKRPLTSYFLYYIRKRDKIAKERPELDTLELNKYISEKYQNLPLDKKQKYEDLAAKNREEYKRQMEEFYGKHPEMRKVIVKRPRKEKKQKPPKRPDNPYRLFMQSELSREEIADEDKAEFKEVCREKWRQMSDAKKLGWINLAEEQLQKYEEELKEYMAMHPEFTAKQQPKPFLSREEINLKDKLAGKPKKPPGTAYGLFISLTLQGNEIVNIPPKERWVYTSAKWKAMTEDERDQYKQLLAQVHEQYDADFKAYLESLPEDKRQEEILRNLPKKRKNAASTSKAQQSRRKNVASTSNTKPKPQNPIPPPRSAFKYFSEKYRGENPKDAWKNLSPVEKQKYEKDLSVLKDKYIKQFESFLKGLSKDELAAFCANRNARTEDYSSSDDTETESEHGDNDDSSDDSSDSSQSDNESDEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01240650;
90% Identity: -
80% Identity: -