Bole000805.1
Basic Information
- Insect
- Bactrocera oleae
- Gene Symbol
- -
- Assembly
- GCA_001188975.4
- Location
- LGAM02021086.1:8266648-8271166[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.044 3.8 8.4 4.4 2 23 101 123 101 124 0.95 2 19 6.3 5.5e+02 1.6 0.4 2 23 141 164 141 164 0.67 3 19 1.5 1.3e+02 3.6 2.5 2 23 172 194 171 194 0.92 4 19 2.8e-05 0.0024 18.4 0.6 2 23 209 231 208 231 0.93 5 19 0.00043 0.037 14.7 0.0 1 20 241 260 241 261 0.95 6 19 2.1 1.8e+02 3.1 3.3 1 23 288 316 288 316 0.80 7 19 0.00036 0.031 14.9 3.1 1 21 326 346 326 347 0.95 8 19 8.7 7.5e+02 1.1 0.4 1 12 439 450 439 456 0.82 9 19 2.4 2.1e+02 2.9 0.2 3 12 471 480 470 483 0.87 10 19 1.1e-06 9.9e-05 22.8 0.9 3 23 516 537 514 537 0.96 11 19 5.5 4.7e+02 1.8 0.2 1 17 560 576 560 577 0.90 12 19 0.2 17 6.3 4.2 1 21 591 611 591 612 0.95 13 19 0.86 74 4.3 2.0 3 12 641 650 640 662 0.80 14 19 0.48 41 5.1 0.1 3 23 773 794 772 794 0.96 15 19 2.3 2e+02 2.9 0.1 2 23 953 976 952 976 0.90 16 19 0.00073 0.063 14.0 0.1 1 23 1104 1127 1104 1127 0.95 17 19 0.5 43 5.0 0.7 1 23 1203 1226 1203 1226 0.97 18 19 0.024 2.1 9.2 1.0 3 23 1236 1256 1235 1256 0.96 19 19 0.0016 0.14 12.9 1.4 1 23 1263 1286 1263 1286 0.96
Sequence Information
- Coding Sequence
- ATGGAGAAAGAGTCAATTACTACACCGCAAGCTATACCCAATGAACAAGCTGCTAACAATCAATCGCATATTGACGTAGATCTGAAAAAAGACGCGGAATTAATAACAGATGAATATGACAGTGATTCCAATGCACATTCCAATGCTGATAATGAAGATTATTACGATTCAGTCTCTGAAAACAGTTTTGAATGTGAACCTAATCTGAACCGTTCATTTCCAGTTTTACACAATTTGGATGCAAATAAGAAAACGTATATAAAAAGTGCCAACTATATTTATGGCAAATATGTTCTACGACAATGTCCCATGTGTGATTCTGAGTTTAATTCTGCTCATTGTTGGAAGAAACATATCAATTACATACATCATCTAGCTACACCGGAAGATTTACAATTCAAATACAACGAAGTAGGTGCAAAGtgtaaaatttgtgattttcaaACGGCTACTCCagattttaacaaattattagaTCATCAAATCTCACATATGCCATTTagtctttttttaaaatgtaaactatGTGATTGGAGAACTAAAACACATCCAAGCATGAATTTTCATTTACGCCAACTGCATTCCGATAAGTTGGATATGACAACAAAGAGTATTGAGTTAACGGTTTGTCCATATTGTCAGCAAGAATTCTCATCACAATGGTATTTGCGGAAGCATATGTTTCAGGAACATGAAAAGACTATTGACGATAGAACATGTTTTATTTGCTTGGATTGTGGTGAAGAATTTTCCACCAATGTTAGTTTACGTGCGcatgtatttgaaaaatttgcagaCAAGTCAGTGGATGAACTAGGCTTCAAAGAGGTAATTTCAGTTGGCGATGATCATGATGTTTCGTACAAGTGCACCCAATGCCCCACGATTTATCGCAAAAATACATCCAGTCGGACATTAACAAACCTACGCGAACATTATATGTTGCATTTAGGCGAACTTACTGGTAAGCAcgcatacaaatgtaaatattgcGATGAAAGTTTTCGTCGATTTGACTATATGCGCTTACACATTTGTGAGGAACTACGTAAAGCTTTGCAGAATTGCGCAAATTCACATACTATATTAGGTGCTAAAAACAGTAGGAATAAGTTGGTAAAGAaaaatatgcaACAAGAACCAGTCGAACTGAAGAGAGACTACATGAAACACATTCGTCATGTTTGTCTAAAATGTGGAAATTCATATGGTAAGTTATTCCATTGCAaacgacatatgtatataaaacatgGCATGAGCAAACCATCGGGACTGGACTTTAAAAAGATAGCAAATCAAAGTGCATCCGAAGTTTATGAATGCACGATATGCGAAGAGTTCACATGCGATTTGGATTTAAATACAATGTTAGTGCACGCGCGTATACATACCGTATATGATCCATTACTctgtaaaatttgtaatacaTCTTTCGCTTACGAAACCGACATACCAGGACATGATTGTATGGATGTGGAGATTGTTGAAACAGTGAAAGAATCAAGATATCCAAGAGAGATCCCCATACCCAATATGGATACGTTTTGCCCTAAATGCGATCTAACATATACAACACCTTCCTCCTTAACGAGGCACATGAACAGAATGCATGGCATGCATGAACCTTACGGGCTTGGATTTGTAGTGTGCGAAACAAACGATAGCATTGAAGATGTATTTCGTTGCACCGTATgtgaaaattttactattaatGAGAAAAATTTGAAAGCTATGTTGGAACATGCGCGACTACATTTGCCCTATGAAAGTTTCAGATGTGTCTTCTGTAAAGAACGATTTCGTTTTAAAGATCAAGCGAGACAACATCAATGTTCAAATAATACAACTGATATGGTTAATACAGTGGATAAATACGATCAAAAAATCTTGAAGACGCGCTTAAATAAAATGGGGCGTTTATGTCCTAAATGCGgtaaaaagtttgcaaaaacGACAGTTTGTAAAGTGCATACAACAAATATACATGGTTTAGATAAACCTGCTGGACTTGGCTTTGAAAAACTAAATACTGACAACAATGATACTAATCGCGAAACATACCGTTGTACCGAATGCTTAAGCTTCGTTGTAGAAAAATTCGATTTAAGTTTAATGTCAGAACATGCTAGAGAACATTTTCCATTCGATAGTTTTTGGTGCATGTTATGTGACgaacaatttaaattcaaattgcaAGCTATTAAACATAAATGTCCGAATGATACAAGTAAAGTAGAAGAAAATAATGATGGCGATTTCGAAAGCACATCGCATACAAAATATCCAAAAACATTTGAGAAGATCATAAAGAAATTTTGTCCCGAATGCAACTTTGAAGTGCCAACAATGAAAGCCTGGCGTTGGCATATAAGTAAATACCATGAAATGACAACACTTGCCGGTTTACAAATGAAGCAAGCCAAGGGCAATTTAGTAGAATGTTTGATTTGTCAAGTGAAGACAACATATATAAGGCGTTTAGATCATCGATTCGTACATCTGCCCTTTAAGCCCTATCAGTGCAGATATTGTTTGGAATATTTCATCGAAGTTGAAAAAGCGAAAGCGCATTGTGGTGATTGCGCTATTGCGCCAGCAGAATTTGACGAAACGGAGGAAACAAAAAAGCCGCAAGCCAATAAGCGTGTAGCGTCCAAACGCAAGGAAGCAAAACTTGATATTAAACGagtcaaaatacaaaataaacgcGAAACTGTGTCACAGGTAAAAGTGAATAAAGCAAACTCGTCCAGTGAACGGATAGACTCCGAAAGTGAAAATGATAATTCAGATGCCAACAGATGTATTAGTGTTGTACTTACAGATGATAATGACTTCGCAAAGTTCATATGTATAAGCTGTCCATTATGCCCGGATACAGAATTCGAATCGAATCTAATGCTGACGCGTCACTTCAACGAAGCACATAATAACTTTCGCGAACATTTCACAATTCATCCAACAAATGCGGCGAATTGTAAAAcgtgcaataaatattttaatatcatatACAAAAAGACTATGATCAAACActatttaagtgaaattaacGCTACATGCTTCTGTTGTCGTCTATGtgataaaaatatactatattttgaaACAATGCGCTCACATCTGCTAGACGATCATCAGGCTGTGATTGCCGGTCAGCAGATACATGAGAATAGCAGCACAAACGCAGAAGCTGGCGAGGAGGTAGATCCTTTGAAAGTAACCGCTGTGGATATATCGAAAGTGTCGCGTACAACCATGGCAATACCGAGCGTTAAAACTGCggtatttaatgaatttaatgcATACATTTCATATGCATGTCCCGAATGCAATGAGCCCTTCGACACATCCGAACAATGGCATTTACACATAAATGGAGCGCATAGTTTCTTTGAACAACATCAGCTGAATATTGAAGCCACATCGGATGGTTTTAAACGTTGCAAACAATGTCGTGTTAATATAAGTGGCGGCATCCTGGCCGAGCAACGACACAAGCTAACGCATATGCAATACAAATCGTTCATTTGTATACTCTGTCAACATCGTTCGACCACGTTGGGTGTGCTCACACAGCATTTTCGCCGCCGTCACTTTGCCAAGGGCACGTTTAAGTGTGTTTTATGCCCAAGTGTACTAAGTACTTCATGCGAACAAATCGAACATATGAAGAATGAGCATGATCCCAGTGAATATCCATCGAAATTGTGTCGTGTCTGCTTCAGCATGTTCAGTTCGAACAACTCGCTGAACACGCATATGGATTTGCATAATCCCAATCGAAAAGTGTTTCAGTGCGACTATTGCGACCGTTATTATAAGTACAAGCGGGAATTGGGTTTACATGTGCGTGCTAAACATCCCGAACAAGAAGCCAAAGCCAGTGAAGGAGGTgactaa
- Protein Sequence
- MEKESITTPQAIPNEQAANNQSHIDVDLKKDAELITDEYDSDSNAHSNADNEDYYDSVSENSFECEPNLNRSFPVLHNLDANKKTYIKSANYIYGKYVLRQCPMCDSEFNSAHCWKKHINYIHHLATPEDLQFKYNEVGAKCKICDFQTATPDFNKLLDHQISHMPFSLFLKCKLCDWRTKTHPSMNFHLRQLHSDKLDMTTKSIELTVCPYCQQEFSSQWYLRKHMFQEHEKTIDDRTCFICLDCGEEFSTNVSLRAHVFEKFADKSVDELGFKEVISVGDDHDVSYKCTQCPTIYRKNTSSRTLTNLREHYMLHLGELTGKHAYKCKYCDESFRRFDYMRLHICEELRKALQNCANSHTILGAKNSRNKLVKKNMQQEPVELKRDYMKHIRHVCLKCGNSYGKLFHCKRHMYIKHGMSKPSGLDFKKIANQSASEVYECTICEEFTCDLDLNTMLVHARIHTVYDPLLCKICNTSFAYETDIPGHDCMDVEIVETVKESRYPREIPIPNMDTFCPKCDLTYTTPSSLTRHMNRMHGMHEPYGLGFVVCETNDSIEDVFRCTVCENFTINEKNLKAMLEHARLHLPYESFRCVFCKERFRFKDQARQHQCSNNTTDMVNTVDKYDQKILKTRLNKMGRLCPKCGKKFAKTTVCKVHTTNIHGLDKPAGLGFEKLNTDNNDTNRETYRCTECLSFVVEKFDLSLMSEHAREHFPFDSFWCMLCDEQFKFKLQAIKHKCPNDTSKVEENNDGDFESTSHTKYPKTFEKIIKKFCPECNFEVPTMKAWRWHISKYHEMTTLAGLQMKQAKGNLVECLICQVKTTYIRRLDHRFVHLPFKPYQCRYCLEYFIEVEKAKAHCGDCAIAPAEFDETEETKKPQANKRVASKRKEAKLDIKRVKIQNKRETVSQVKVNKANSSSERIDSESENDNSDANRCISVVLTDDNDFAKFICISCPLCPDTEFESNLMLTRHFNEAHNNFREHFTIHPTNAANCKTCNKYFNIIYKKTMIKHYLSEINATCFCCRLCDKNILYFETMRSHLLDDHQAVIAGQQIHENSSTNAEAGEEVDPLKVTAVDISKVSRTTMAIPSVKTAVFNEFNAYISYACPECNEPFDTSEQWHLHINGAHSFFEQHQLNIEATSDGFKRCKQCRVNISGGILAEQRHKLTHMQYKSFICILCQHRSTTLGVLTQHFRRRHFAKGTFKCVLCPSVLSTSCEQIEHMKNEHDPSEYPSKLCRVCFSMFSSNNSLNTHMDLHNPNRKVFQCDYCDRYYKYKRELGLHVRAKHPEQEAKASEGGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00191005; iTF_00192397; iTF_00191700; iTF_01563290; iTF_01564155;
- 90% Identity
- iTF_00191700;
- 80% Identity
- -