Blat005854.1
Basic Information
- Insect
- Bactrocera latifrons
- Gene Symbol
- L
- Assembly
- GCA_001853355.1
- Location
- NW:215765-240925[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.6e-05 0.00092 19.1 1.7 1 23 186 208 186 208 0.98 2 18 0.38 21 5.3 5.7 1 23 214 236 214 236 0.98 3 18 2.1e-07 1.2e-05 25.0 3.1 1 23 242 264 242 264 0.99 4 18 1.7e-05 0.00096 19.0 0.2 1 23 270 292 270 292 0.98 5 18 1.8 1e+02 3.2 0.7 2 23 356 379 355 379 0.82 6 18 0.0015 0.085 12.9 0.1 2 23 408 430 407 430 0.95 7 18 0.024 1.3 9.1 0.8 1 23 521 543 521 543 0.97 8 18 2.5 1.4e+02 2.7 2.0 2 23 551 572 550 572 0.91 9 18 0.11 5.9 7.1 0.5 1 23 580 605 580 605 0.89 10 18 1.2 68 3.7 0.1 1 19 610 628 610 630 0.90 11 18 0.59 33 4.7 2.1 1 23 640 662 640 663 0.95 12 18 0.003 0.17 11.9 2.5 1 23 700 722 700 723 0.96 13 18 1.4 81 3.5 0.2 1 23 894 918 894 918 0.88 14 18 0.0016 0.089 12.8 4.7 2 23 927 949 926 949 0.97 15 18 0.1 5.8 7.1 0.1 1 23 955 977 955 977 0.92 16 18 0.062 3.5 7.8 0.3 2 23 985 1006 984 1006 0.96 17 18 0.0033 0.18 11.8 0.3 1 23 1135 1157 1135 1157 0.96 18 18 0.0072 0.4 10.7 2.8 1 23 1164 1186 1164 1186 0.97
Sequence Information
- Coding Sequence
- ATGGCTGTAAAGATGCTCTATCGAGGGCCAAGTTCGAggcttgaaaatttaattgaaaagatACAGGCTACAAAGGAAATTGGAACTTCGGataTATATTCAACGCAAACATCCTCAAACTATTCACCGTCTGTGTCGGATGGTACCTTAACACCAAATTCATTACAAAATCATGAACACATAACACCACATCTTGCTCATCTACAAACCATTCCATACTTTCCGCAGCAGCGTTCCGACGGGAGTGTTAATCAAAACGAAAATCAAGGTAAACGAGTTAATATTGACGGAAACGAAATGGAGGGTAATGAAGATGCCAAACCAACAGAAAACAGTTCTGCGAAGACGCTTAACACAACTAAACTTGAAGAAAGCAATGGTAATTCGAATATTCAACACAAACGACAAGTGCGCCTTCACCGGCAGCACCTTTACCACCATGGAGAGTATCACACTGCGAAGCTTGTTACAAAACTGAGAAAAATCGAAAGAGTCGAGACAAAGTTTGATAAGTTGACAGGAGATGGCATTAAGGGAAGCAACGTTGATGGGTCTTATCAATGTCAATTCTGTGAAAAATCATTTCCGCGGCttggttatttaaaaaaacacgaACAGagtcATGCCGAACATCTACCTTTCAAATGTGAATATTGCGCTAGACTTTTCAAACATAAAAGGTCTAGAGATCGGCACACCAAGCTGCATACTGGGGATCGACGATACCGTTGTCCACACTGCGAGGCAGCTTTCTCTCGAAGtgaTCATCTAAAAATTCATATGAAAACCCACGATAATCAGAAACCATTCCAATGCACGGTATGCAATCGTGGCTATAATACAGCTGCAGCATTAACTTCGCATATGCAAAACCACAAGAAACAAGCAGCCATTTTATCGGCAGGGAGAAACCCTCAAGCTCTTAATTACAGTCCTCGATCAAGTGGATCGGTATCAAGTGGTGGAAGTTTACCAAAAAGGAGCTATGGCGCATCATTAATTACTGGCATTAGTAAAACCAATCGAATGGACCATCCGAAACGACCCAGCACAGTTAATCTGCTGACGTGTAATTATTGCTCCAAGTCCAAGTTTATTTCTATTGAGCAGTTCAATGAACATATTAGCTCGAATCATAGCAATGATTTATTTTCCGTAAAGAAACCGGCTCCACAGCTTGCTATAAGTAACGCTATTTCGGAAATAAACCCGTTCCAGCTGAGTTGTGAATATTGCACTAGAGAGTTTGGAAACCTTCCAGCTTTATTTCAACATATACGCCTCGCACATGTTGATCGATTGGCCAGTCCCAATTCATATTTTGAACATTTCAATCGTTTGGCTGCATGTGGTACTTTTAGTCCTCGTTTGGTAAGTGACAAAACAGTTGAAAGGGAAGGCATCACGGTAAATGAGAGTAATATAAAGCTAGAGCCACTTTTACCTTCAGCAAACGTCCATGCTGAAAAACAAGAGGATGAGCCCACTGATCTTAGTCAAAATAATCGACGTTCTTCAACTGCGCTCCAAATGCCAGAAGAGTCTCTCCAGCCAGATATGTTTTTTTGCAATCAATGTAATGCTGGATTACCAGATTTTGATACATTTCGAAACCACTTAAAAACTCATATAACGCAAGACGTAAACCTTATATGTCATCATTGTGGTTTGGCTTTACAAGAACAATCAGAACACGAACGGCATGTGatttcacattatttaataaCAAGTTCTGAATATATTTGTGCGGGCAACAAGTGTGACAAATCTCATTCAAAACCGGAGGAACTTCAAGATCATATGTTTGAGCAGCACGCAATCCCTATGTTCAAGTGTTCTGTGTGCTCCGAACTATTTGAGTCAAAAATGGCAATTCAGATGCATTTTGCTTGTACACATTCCATTGAAACTAAAATATTCCGTTGCTCAGCCTGTATGGAAATATTTCGATCTGAAAATGAGTTTAGTACGCACGTCAAATCACATCATCCTGGTCTTAATAGACCGACACCTAATTCCCTTCAATGCATGTTTTGCCGCACTATTTGTTCAAATGAATTAGAGATGCATTTTCACTTAGCTGCACATGCTCGTCAATTCCAGTGCCCTTCATGTCCGGAAACATTTCATGTCGAATTTCTTTTAGATCGACATATGCAAAATCATCATACAGACAATAATCGAGAAGCATTGTCTTCGAACGGAACATACGAAGAAGTATCAACATCTTCAAATATGCCGAGTCAAATGAACTCTCCTTATATGAATTCCTTAATAAACAAAGCGCcactaatgaatatttcttcacaaaataacAATACAAGCATTCTTGACTACAATATTGCTTTTGCGGCACATCttaataaaagaattttccCTGGTCCCCATGAGGCTGCGACAACATTGACCAATGGCAAGTTTTATAATGCTTTGCAAGTGGATACAGACACCGTGAAACATCCCGATCTCATGTATGGGCTCAGTGGACGGTATTTTGACACAAGCCGGACATTGATAGAGATGTATGCACATCGTAGAATGGAGAAACCAAAAACTGTGGAAAACTATTATAACagaacaaaacaacaacatttaaaatCTCAAACAGATTCAAACCGAATACGATCACCCGTAGAGTCAATAATTCCAACTCCCATTTCTTCGAACTCTTCAAAGGGGTATAGCTGTGATATTTGCGAACGTAATGATTTCCGATCAGAAGGAGAAGTTAATTCGCATCGTAAAATCGTTCATAACATAAAAACAGGTGTTAGTCTGCGCTGCGCTTATTGTTCAGGAAATTTTAAGTCACGCACTGAGTTGGAACATCACATGAGAACTTGTCATAATTCTACCGGTAAACACAAATGTCTCATTTGCGATGAAATTTTCCCCTCGCCAGCTATATTGGCGGAACACAAATTGCAACATTCCAAGGTTGGTCAATCCGGAAAATGTTCTCACTGCAGCAAACCATTGGACGATGTTGCAGCATTTAAAGCACATCTTAGTGAGCACAACATTGAGAGTCAGCTTCCCATGCAATGTATCTGCTGCCGACAATCGCTTCACTCTGATTTTGAAATCAGTTTGCATGCTCAgttCCATACTAAATCTTCGAACGTCCCAGAAAGTGTATGTGCTCTTTGCTTAGAGTCTATTCCCAACCCGATTAACGGAGAAGCAAAAGTTTGTGACAAATgctgccgaaaacacaaacttGGCTCTCATTTTCAGGGCCAAAGATTACGTAATGTTCCTTATGAACCTATTTCCGAAGCTTGCCAAAGCACAATGAAGGTTGAAAGTCGTTGTAATATCTGCAAATTGATTCTACCATGCACCCAAAAACTCCAAGAACATTTAGTCGAACACACATTTGCTGGTTGTGAAGAGCGAGGCTTTAATTGCTATATATGCTCTGCTGTGTTTACTGCTCCAAGTGGTTTGCTATCCCACATGCATGAGCATGGATTGCAGAGCAGGCCCTACGACTGTAATCTATGTagcgaaaagttttttttccgAACGGAACTTGAGCATCATTTACTGAGCCATGAGAAGCGGCAACTGCTTGaatctaaaaataaagaaaaatgtgagaacaaattttcgtttcttAAAGAAGTCGATAACTCTGCGTCCCATCTGACTGAAGTTAAAAGGGAAATATTCCCGGTTAATGATAAAATCATAGCAGGCGAAGAGGATGAGTATATCGAAATAGAAAAAGTTACTGATGTCCATCAGACATATAATAATGCAAAGCAAACTTTTGTCACACATAAAGAAGGCTTACCAATGGAAGAATTAAACCAAAATTGTGCCGAAGAAAAccgtatttaa
- Protein Sequence
- MAVKMLYRGPSSRLENLIEKIQATKEIGTSDIYSTQTSSNYSPSVSDGTLTPNSLQNHEHITPHLAHLQTIPYFPQQRSDGSVNQNENQGKRVNIDGNEMEGNEDAKPTENSSAKTLNTTKLEESNGNSNIQHKRQVRLHRQHLYHHGEYHTAKLVTKLRKIERVETKFDKLTGDGIKGSNVDGSYQCQFCEKSFPRLGYLKKHEQSHAEHLPFKCEYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKQAAILSAGRNPQALNYSPRSSGSVSSGGSLPKRSYGASLITGISKTNRMDHPKRPSTVNLLTCNYCSKSKFISIEQFNEHISSNHSNDLFSVKKPAPQLAISNAISEINPFQLSCEYCTREFGNLPALFQHIRLAHVDRLASPNSYFEHFNRLAACGTFSPRLVSDKTVEREGITVNESNIKLEPLLPSANVHAEKQEDEPTDLSQNNRRSSTALQMPEESLQPDMFFCNQCNAGLPDFDTFRNHLKTHITQDVNLICHHCGLALQEQSEHERHVISHYLITSSEYICAGNKCDKSHSKPEELQDHMFEQHAIPMFKCSVCSELFESKMAIQMHFACTHSIETKIFRCSACMEIFRSENEFSTHVKSHHPGLNRPTPNSLQCMFCRTICSNELEMHFHLAAHARQFQCPSCPETFHVEFLLDRHMQNHHTDNNREALSSNGTYEEVSTSSNMPSQMNSPYMNSLINKAPLMNISSQNNNTSILDYNIAFAAHLNKRIFPGPHEAATTLTNGKFYNALQVDTDTVKHPDLMYGLSGRYFDTSRTLIEMYAHRRMEKPKTVENYYNRTKQQHLKSQTDSNRIRSPVESIIPTPISSNSSKGYSCDICERNDFRSEGEVNSHRKIVHNIKTGVSLRCAYCSGNFKSRTELEHHMRTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCSHCSKPLDDVAAFKAHLSEHNIESQLPMQCICCRQSLHSDFEISLHAQFHTKSSNVPESVCALCLESIPNPINGEAKVCDKCCRKHKLGSHFQGQRLRNVPYEPISEACQSTMKVESRCNICKLILPCTQKLQEHLVEHTFAGCEERGFNCYICSAVFTAPSGLLSHMHEHGLQSRPYDCNLCSEKFFFRTELEHHLLSHEKRQLLESKNKEKCENKFSFLKEVDNSASHLTEVKREIFPVNDKIIAGEEDEYIEIEKVTDVHQTYNNAKQTFVTHKEGLPMEELNQNCAEENRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01563182;
- 90% Identity
- iTF_00193843; iTF_00190231; iTF_00190902;
- 80% Identity
- -