Basic Information

Insect: Bactrocera latifrons
Gene Symbol: Sall1
Assembly: GCA_001853355.1
Location: NW:2514227-2516780[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.1e-05 0.0017 18.2 1.1 1 23 26 48 26 48 0.95

2 14 1.4e-05 0.00076 19.3 3.7 1 23 54 77 54 77 0.94

3 14 0.00076 0.042 13.8 0.3 1 23 84 107 84 107 0.95

4 14 0.0084 0.47 10.5 0.2 1 23 118 141 118 141 0.95

5 14 7.1e-05 0.004 17.1 1.4 1 23 250 272 250 272 0.98

6 14 4.2e-06 0.00024 20.9 1.9 1 23 278 300 278 300 0.98

7 14 8.4e-05 0.0047 16.8 0.5 1 23 313 335 313 335 0.98

8 14 0.00072 0.04 13.9 1.3 1 20 343 362 343 364 0.94

9 14 0.0012 0.065 13.2 2.7 2 23 425 447 424 447 0.92

10 14 0.058 3.3 7.9 5.4 1 23 465 487 465 487 0.99

11 14 0.00092 0.052 13.5 4.1 1 23 553 575 553 575 0.97

12 14 1.6e-06 8.7e-05 22.3 3.2 1 23 581 603 581 603 0.98

13 14 2 1.1e+02 3.0 1.2 5 23 614 632 610 632 0.85

14 14 0.0001 0.0057 16.5 1.1 1 23 638 661 638 661 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.1e-05	0.0017	18.2	1.1	1	23	26	48	26	48	0.95
2	14	1.4e-05	0.00076	19.3	3.7	1	23	54	77	54	77	0.94
3	14	0.00076	0.042	13.8	0.3	1	23	84	107	84	107	0.95
4	14	0.0084	0.47	10.5	0.2	1	23	118	141	118	141	0.95
5	14	7.1e-05	0.004	17.1	1.4	1	23	250	272	250	272	0.98
6	14	4.2e-06	0.00024	20.9	1.9	1	23	278	300	278	300	0.98
7	14	8.4e-05	0.0047	16.8	0.5	1	23	313	335	313	335	0.98
8	14	0.00072	0.04	13.9	1.3	1	20	343	362	343	364	0.94
9	14	0.0012	0.065	13.2	2.7	2	23	425	447	424	447	0.92
10	14	0.058	3.3	7.9	5.4	1	23	465	487	465	487	0.99
11	14	0.00092	0.052	13.5	4.1	1	23	553	575	553	575	0.97
12	14	1.6e-06	8.7e-05	22.3	3.2	1	23	581	603	581	603	0.98
13	14	2	1.1e+02	3.0	1.2	5	23	614	632	610	632	0.85
14	14	0.0001	0.0057	16.5	1.1	1	23	638	661	638	661	0.97

Sequence Information

Coding Sequence: ATGGATGACAGCCAGTACAATACAGAAGGCCCTCCTAGTAATCAAGGAACTCGAATTAACCACAAGGCTGGCCGATTTACGTGTCTTACATGCAGTAAGCGTTTTACAAAACCATCTCTTCTGCGCCGTCATGAGGTTATACATTTGCCAGATAAACCCTTTGAGTGCTCGGAATGTCATAAGCGCTTTTCACAAGATTCCTCATTGCGACGACATTATTTAGAGAAACACGATTCAAATTTAAAGCGTTTCCAATGCATTAAATGTCCACTCAGctttgctcaaaaaaataatttacgtttACATGTTGAAAAGGTGCACCCGTCAAAAATATTGGGACATGCAAAGAGCTACGCCTGCGACCGATGTCCATCTGTATATGGGAGCAAACAAAAACTTAGTAGGCACATAAATTTAGTGCACAAAGATGGTAATAGATCTAAAAATGCTATTGATAAAATAGAAGATGATGATTTGGCATTAACTCAAAGCGTTTTGGAGCAActcaaaacatttcaaatggAAATGAGTTCCTTACCAGCATCTGTCTTGGAATTTGAAGAGAATTTTGATGCTACAAACGTAAATGTCTTAGACAAccccaaaaattttattgaagtgcCAACACAGCAACCAGAAGAAGAATGTATTATTGATGAGGTGCTACTTAAAGATCGTTTAAATGCGCAAGGTATTGAATGCTACCTGAGTGTGCAGCGCACTGTAAGGAAAGATGGATGtgctgtatatatatgtgaatttTGCGCtaaagaatttcgaaaatcataCGATTACATCAGACACCGACGTGTACATACAAGTGAGCGGCCCTACAGCTGTGGATTGTGTGAGCGTGCATTCAGCACCAAATCGAAGCTCCACGAGCATATGAAGATACATCGTTTAAGTGAGCAGCAAGGCATACCGGCAAAATATTATCCCTGCGCAGTTTGTAGTAAAGGATTTAGTTCACTGCGATTTCTGGACAAACATATGAGcACCCACGAGCAAATTTACGAAGTCgcatataaatgcaaaatatgtgaagaaatgTTCAAATCCAGCATCGCACTTACTTaccacaaacacaaacaatttgATGCAGACTCTGAATTATTGCAACAACTACTACCAACACCTACTGAAATCTATACAAATGGCAATAGTACGGAAAGCAGCAGTGGAATACAAGATTCTTCCGCTGCAGATTGCCCACCagaaacaataattaatatgcaACACTTAAAAATGAAGCGTGTTGTGTCTAAATGGAAATGCATTACATGCGAAAGacatttttcCAATTCCTCCACACTACGTGATCACCGGCGTATATATCATGGGGTTTATAATCGTAAACGACGCATATCAGCTTCAGCCTTTCTTCGTTGCTTCAAATGTTCTTATTGCGCGCGTTTCTTTGAAACTAAAGCTCGTTGTAAAACACACATGTTGACACACTTGAAATGTGTACTAAACACAGATAAATCCAATCAGCAGCCGAATGCAACAAACATAATTAATGCATTAGTGTTTGTCACTAGCTTAACAAATCCTGTCTCTGTTaaagttgtagaatttaatgtaATAACAAAACGTCGCGCAACAAATATGcaacatataattaaaaaacgcGTAAAAAATTCACCGCAGCtttataaatgtaatatttgtaaGGATAAATTTCGTAAACAATGCGATTTAAAACGTCACTTAGTTGTGCATACAGGTGAACGTTTACATAAATGTGCCACATGTGATAAAAGTTTCAGTTTGAGTAGTACGTTGAAGCAGCATATGCTAACACACACCACAGAGCGTGCAAAGCACATTTGTATCGTTTGTATGAAAACTTATTTGACCAAGAAAGCGCTCAATGTGCATTTAAGACTGCATACCGGCGTGCAGCCGTTTCAATGTGAACACTGTGAGCTCGTATTCCGCACTTCTGGTCAAAGGATAGCACATTTAAAAGTTAAGCATGGCATACAGAAATTGAAATCGaccaataaaaaggaaaatgcaCCTTAG
Protein Sequence: MDDSQYNTEGPPSNQGTRINHKAGRFTCLTCSKRFTKPSLLRRHEVIHLPDKPFECSECHKRFSQDSSLRRHYLEKHDSNLKRFQCIKCPLSFAQKNNLRLHVEKVHPSKILGHAKSYACDRCPSVYGSKQKLSRHINLVHKDGNRSKNAIDKIEDDDLALTQSVLEQLKTFQMEMSSLPASVLEFEENFDATNVNVLDNPKNFIEVPTQQPEEECIIDEVLLKDRLNAQGIECYLSVQRTVRKDGCAVYICEFCAKEFRKSYDYIRHRRVHTSERPYSCGLCERAFSTKSKLHEHMKIHRLSEQQGIPAKYYPCAVCSKGFSSLRFLDKHMSTHEQIYEVAYKCKICEEMFKSSIALTYHKHKQFDADSELLQQLLPTPTEIYTNGNSTESSSGIQDSSAADCPPETIINMQHLKMKRVVSKWKCITCERHFSNSSTLRDHRRIYHGVYNRKRRISASAFLRCFKCSYCARFFETKARCKTHMLTHLKCVLNTDKSNQQPNATNIINALVFVTSLTNPVSVKVVEFNVITKRRATNMQHIIKKRVKNSPQLYKCNICKDKFRKQCDLKRHLVVHTGERLHKCATCDKSFSLSSTLKQHMLTHTTERAKHICIVCMKTYLTKKALNVHLRLHTGVQPFQCEHCELVFRTSGQRIAHLKVKHGIQKLKSTNKKENAP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00193729; iTF_00190112; iTF_00190816;
90% Identity: -
80% Identity: -