Bcor011080.1
Basic Information
- Insect
- Bactrocera correcta
- Gene Symbol
- -
- Assembly
- GCA_027475135.1
- Location
- CM050327.1:5918315-5920701[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.4e-05 0.0039 18.3 1.5 1 23 25 47 25 47 0.96 2 14 1.9e-06 0.00022 22.2 4.2 1 23 53 76 53 76 0.94 3 14 1.8e-05 0.002 19.2 0.5 1 23 83 106 83 106 0.93 4 14 0.0048 0.55 11.5 0.3 1 23 117 140 117 140 0.96 5 14 7.8e-05 0.009 17.1 1.4 1 23 225 247 225 247 0.98 6 14 2.1e-06 0.00024 22.1 0.9 1 23 253 275 253 275 0.98 7 14 2.9e-05 0.0033 18.5 0.2 1 23 288 310 288 310 0.98 8 14 0.00079 0.091 14.0 1.3 1 20 318 337 318 339 0.94 9 14 0.0013 0.15 13.3 2.7 2 23 400 422 399 422 0.92 10 14 0.004 0.45 11.8 5.2 1 23 440 462 440 462 0.98 11 14 0.00044 0.051 14.8 5.4 1 23 528 550 528 550 0.97 12 14 3e-06 0.00035 21.6 2.3 1 23 556 578 556 578 0.98 13 14 0.11 12 7.3 1.3 3 23 587 607 585 607 0.91 14 14 0.00018 0.02 16.0 1.0 1 23 613 636 613 636 0.97
Sequence Information
- Coding Sequence
- ATGGATAACAGTCAGTACAATACAGGAAATCCTAGTAATCAAGGATCTCGAATTAACCACAAGGCTGGCCGATTTACGTGTCTAACATGCAGTAAGCGTTTTACAAAACCATCTCTTCTGCGCCGTCATGAAGTTATGCATTTGCCAGATAAACCCTTTGAGTGCTCGGAATGTCATAAGCGATTTTCACAGAATTCCTCATTGCGACGGCATTATTTAGAAAAGCATGATTTAAATTTAAAGCGTTTCCAATGCAATAAATGTCCACTTAACTTCGCTCAAAAAAGTAATCTACGTTTACATGCTGTAAAGGTACACCCATCGAAAATATTGGGAAATGCAGAGAGCTACGTCTGCGACCGATGTCCATCTATGTATGGGAACAAACAAAAACTTAGTAGACACATAAATTTGGTGCACAAAGATGGTAACAAATCTAAAAATGCTTTTGATAAAATAGAAGAGGACGATGATTTGGCATTAACTCAAAGCGTTTTGGAGCAATTGAAAACATTTCAAATGGAAATGAATTCCGTACAAACGCCATGCCACAGCAACAAAGAAGAAGAACGTATAATCGATGAGGTGCTCCTTAAAGATCGTTTAAATGCACAAGGCATTGAATGTTACCTGAGTGTGCAGCGCACTGTAAGGAAAGATGGGTGTGCTGTATATATATGTGAATTTTGCGCTAAAGAATTTCGAAAATCATACGACTACATCAGACATCGACGTGTGCATACAAGTGAGCGGCCCTACAACTGTAGTTTGTGTGAGCGTGCATTCAGCACAAAATCGAAACTGCTTGAGCATATGAAGATACATCGTTTAGATGAGCAGCAAGGCATACCAGCAAAGTATTATCCCTGCGCAGTCTGTAGTAAAGGATTTAGTTCACTACGACTGCTGGACAAACATATGATCACCCACGAACAAATTTACCAAGTCGCATATAAATGCAAAATTTGCGAAGAAATGTTCAAATCTAGCATAGCACTTACTTACCACAAACATAAACAAGTTGATGCAGACTCTGAATTTTTGCAACAACTACTACCAACACCTACTGAAATCTATACAAATACTAATAGCACGGAAAGCAGTTGCGAAATACCAGATTCTTCCGCTGCAGTTTCCATACCCCAAACAACAAATATATTGCAACACTTAAAGAGGAAGCGTGTTGTGTCTAAATGGAAATGCATTACTTGTGAAAGACATTTTTCAAATTCCTCCACATTACGTGATCACCGGCGTATATATCATGGGACTTATAATCGTAAACGACGCATATCCGCTTCAGCCTTTCTTCGTTGCTTCAAATGCGCCTATTGCACGCGTGTCTTTAAAACTAAAGCGCGTTGTAGAACACACATGTTGACACACTTGAATTGTTTACTAAACACAGATAAATCTAATCAGCAGCCGAATGCAACAAATATAATTAATGCTTTAGTATTTGTCACTAGCTTAACAAATCCTGCCTCCGTTAAAGTTGTAGAATTTAATGTAATAACAAAACGTCGCGCAACAAATATGCAACGCATAAGTCAAAAGGGCGCAAAAAATTCACCGCAACTTCATAAATGTCATATTTGTAAGGATAAATTTCGTAAACAATCCGATTTAAAACGTCACTTAGTTGTGCATACAGGTGAGCGTTTACATAAATGTGCTACATGTGATAAAAGTTTTAGTTTGAGCAGTACGTTAAATCAGCATATATTAACACACGCCACAGAGCGTGCAAAACACATTTGTATCGTTTGTACAAAAACTTATTTGACCAAGAAAGCGCTCAATGTGCATTTAAGGCTGCATACCGGCGTGCAGCCGTTTCAATGTGAACACTGTGAGCTCGCATTCCGTACTTCTGGTCAAAGGATAGCACATTTAAAAGTGAAGCATGGCATACAGAAATTGAAATCGACCAATAAAAAGTAA
- Protein Sequence
- MDNSQYNTGNPSNQGSRINHKAGRFTCLTCSKRFTKPSLLRRHEVMHLPDKPFECSECHKRFSQNSSLRRHYLEKHDLNLKRFQCNKCPLNFAQKSNLRLHAVKVHPSKILGNAESYVCDRCPSMYGNKQKLSRHINLVHKDGNKSKNAFDKIEEDDDLALTQSVLEQLKTFQMEMNSVQTPCHSNKEEERIIDEVLLKDRLNAQGIECYLSVQRTVRKDGCAVYICEFCAKEFRKSYDYIRHRRVHTSERPYNCSLCERAFSTKSKLLEHMKIHRLDEQQGIPAKYYPCAVCSKGFSSLRLLDKHMITHEQIYQVAYKCKICEEMFKSSIALTYHKHKQVDADSEFLQQLLPTPTEIYTNTNSTESSCEIPDSSAAVSIPQTTNILQHLKRKRVVSKWKCITCERHFSNSSTLRDHRRIYHGTYNRKRRISASAFLRCFKCAYCTRVFKTKARCRTHMLTHLNCLLNTDKSNQQPNATNIINALVFVTSLTNPASVKVVEFNVITKRRATNMQRISQKGAKNSPQLHKCHICKDKFRKQSDLKRHLVVHTGERLHKCATCDKSFSLSSTLNQHILTHATERAKHICIVCTKTYLTKKALNVHLRLHTGVQPFQCEHCELAFRTSGQRIAHLKVKHGIQKLKSTNKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00191504;
- 90% Identity
- -
- 80% Identity
- -