Bros021722.1
Basic Information
- Insect
- Bacillus rossius
- Gene Symbol
- -
- Assembly
- GCA_032445375.1
- Location
- CM063640.1:341780435-341791835[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.23 4.8e+03 0.3 0.1 25 44 26 45 20 49 0.76 2 5 0.0013 28 7.4 0.3 21 45 50 74 47 78 0.81 3 5 1.2e-05 0.25 14.0 0.2 17 44 74 101 69 107 0.90 4 5 0.26 5.5e+03 0.1 0.4 22 35 135 148 129 164 0.74 5 5 1.5e-05 0.31 13.7 0.0 22 45 191 214 186 217 0.91
Sequence Information
- Coding Sequence
- ATGGGTTTTGGTTTTTCTACAGAGCCAGTCAACAACATCATGAAGGTCATTACACTTCCTTCAGAGACGAAGCAGTATACTTGTTCAGTTTGCGATGCGAAATTCGCCAAGAGGTATCACTTGAACCATCACGTGTTCCTCCACACAGGCGAGAAGCCCTTTGCGTGCCCGGTCTGCGATGCCAAGTTCGCCCGAAGGGCACacatgcagcagcacctgtctcGGCACCTGGGCGAGAAGCCCTATTCGTGCTCCATTTGCGACGCGAGGTTCGCCCAGAGCGGGCACGTCAAGAGGCACATGCTGACCCACGCGACGGACAGGACGTACGAGTGCGCGGTCTGCGGGTCGAAGTTCACCACCAAAAGCTGCCTGAACACCCACGTGTCGACACACGCCGAAGACAAGCCCTATGCGTGTGAAGTCTGCAACGCGAGGTTCGCCAGGCAATGCTACGTCACTCAGCACATGTCGACCCATGGGACGGAGAAGTCATTCAAGTGCTCCGTGTGCGACACCAAGTTCCCCAGCAAACGTCTCGTCGGTCAGCATTTGCGCGTCCATGGTGGTGAGAAACCTTTCGTCGGTCCCGTGTGCAACGCAAAATTTGAGCAGAGCGGTAACTTGCACAGACACATGTCTGTACATGGAGAGGATGGATATGCTGTCGCGCGGGCGTCCTTGTCCGCGGAGGACGCGTCACCTCGCGGCCGCGAGAGGAACTACGCCTGCGCGGTcacggggaggggaggggctcgACCGGGTGGTTGGTCGCGCGGCGGGCTGAGACTGCGACTGCGATGTCGCCGTCCTCGCTCGCCACTTGGCTGCACCTCGTCGCGTCCACCGCGCCGCGTGGACGCGGGGCAGACACACACCGCGGCTCGCCGACCCCGGAGTTCGCCGCTTGCTCGTTCCGACTTCGCGGTCGGAGCTGAAGAAATGGGAAAAGTGCCGAGCCCCCCGTGCAGTTAG
- Protein Sequence
- MGFGFSTEPVNNIMKVITLPSETKQYTCSVCDAKFAKRYHLNHHVFLHTGEKPFACPVCDAKFARRAHMQQHLSRHLGEKPYSCSICDARFAQSGHVKRHMLTHATDRTYECAVCGSKFTTKSCLNTHVSTHAEDKPYACEVCNARFARQCYVTQHMSTHGTEKSFKCSVCDTKFPSKRLVGQHLRVHGGEKPFVGPVCNAKFEQSGNLHRHMSVHGEDGYAVARASLSAEDASPRGRERNYACAVTGRGGARPGGWSRGGLRLRLRCRRPRSPLGCTSSRPPRRVDAGQTHTAARRPRSSPLARSDFAVGAEEMGKVPSPPCS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00189293;
- 90% Identity
- iTF_00189293;
- 80% Identity
- iTF_00189293;