Bros087072.1
Basic Information
- Insect
- Bacillus rossius
- Gene Symbol
- -
- Assembly
- GCA_032445375.1
- Location
- CM063653.1:44181594-44192663[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 3.6e-05 0.76 12.4 0.2 23 45 86 108 81 111 0.92 2 8 0.0094 2e+02 4.7 0.1 21 44 112 135 108 142 0.87 3 8 0.84 1.8e+04 -1.6 0.0 27 51 146 170 145 171 0.78 4 8 0.00041 8.8 9.0 0.0 21 46 168 193 160 199 0.90 5 8 0.02 4.2e+02 3.7 0.2 24 44 199 219 194 227 0.83 6 8 0.0092 2e+02 4.7 0.1 13 44 216 247 214 252 0.85 7 8 0.0013 28 7.4 0.1 21 44 252 275 249 281 0.90 8 8 0.055 1.2e+03 2.2 0.2 22 46 281 305 277 311 0.85
Sequence Information
- Coding Sequence
- ATGCGCTTGCATGATGAGAGGTTCGCAAGCAGTTCAAACAGAGGTTTCCTGACCTCACCATCTGATACCTTTCCTTTGGAGATGACTCAAGGAACTTGGGGCACTGGTAGATTTTGCTGGGCCCCGGGCGGCCTCGTGACCAAGAGGCAGCCGGGCGATGCGGCCTCGCAGTTCCACGTGCCACTCAGCAACCCGCACGACGACCGCAGCGCTGGCTTCCACAGCAAGGCGCAGCTGACGGAGCACCTGCTCACGCGCCCCCACCACTGCCCCGTGTGCCGCGCCGGGTTCGCGGACAGGCGCAACCTGGGGCGCCACCTCGCCACGCACGGCTCCGACAATCCCCACGAGTGCCCCGAGTGCCGCGCCAGCTTCTCCCTGGACGCCTACCTCAAGCGGCACATGCTCACGCACACCCGCCACAGGCTGCTCAGGTGCTCGTTCTGCCCGGCCGAGTTCGTGGAGCGCGGGAACCTGGGCCGCCACGTGGCGACGCACGCGAGCGCGCGGCCGTTCCGCTGCCCGCTGTGCGATGCCGCCTTCTCGCTCAAGGGCGCGCTGAAGCGACACCTCGATGTCCACAGCGGGGAGAAGCGCTTCGAGTGCGACGTGTGCGTGTCGCGCTTCGCCGACAAGCGTAACCTCGAGAGGCACAGGAACAACCACAAGGCGGAGCGGCCGTTCAAGTGCTCCGTGTGCAGCGCCGACTTCTCGCGCAAGAACTACCTGGAGAAGCACGTCCTGGTGCACACGGGCGAGGAGCCGTTCCGCTGCCCGCTGTGCGCCGCCCGGTTCCTGCTGGGCGGCTCGCTGCGACGCCACATGCTGGTCCACTCGCGGGACCGCCCCTTCGCCTGCAGGTTCTGCAACGCCTCCTTCTCCAAGCGGGACGCGCTCACCCGCCACATGCACGTCCACCTCTCCAGCCCCTCGGCGTGCCTGCACGTTGCTGAAGTTGTGAGAGGAGGGGTTGACAAGGGAGAGGGTATGGTCCATGCCTCGGTCATGGTTCCTGGAAGCATAGCAGAGAACCTAAGAGGGCCAGGGGTGGCGGGGAAGACCAGCACATCCGCTTGCTCGCCAGGACCTTGGGCCTGGGAAAGCGAGCTAGGCTCGCCTGACGAGGCAGTTACCCCTGCTGCTGTTCACTGCATTTCCTGTTTCCTGTGCAAAAGTGCATCACGCCACactacctccctcccccctctctcctCCCAGCGCTGTGCTCTGCTCTCTCTGGGCCTTGCGCCTGGATCCTTTTCACACCTCGGCAGTGTCCTGGCCCGCCCACTTTCACCCTTCTGCGGACTACTGCTtGTGCTACTTCTGCCTCCCAGCGCGCTGCTCGCGTCCCTCGACTCTCGTCGCGACGACATGCGCCAGATGCAACCACCGTGCTTATCTGAGTTGTATCTTGGTTTACAAGTATTCCCTCCCTCCATCCCTTTTTTGGGCCGCGAGCTCAATCATCCCTTGCTTAATCAGTGGGGCCTGCCGCCGCTGAACTCCAGCCTGGACGTCGCCGGACTTGAATGTGTTCTTGATAGTCGTCTCTCACATAAGTCCACCGCCAGCAACGCCCTGATCAAAGTTCAGTTTTTCAGGCGTCCGGTCACGAGGCACGCCGGCTTCCAGGAATCAGCAACGACGCACAAGCACACTCATCCTTGGTTTGTACAGCATACAGAGTTTCACAAACAGTTCTGTGTACATGCCCGCTGA
- Protein Sequence
- MRLHDERFASSSNRGFLTSPSDTFPLEMTQGTWGTGRFCWAPGGLVTKRQPGDAASQFHVPLSNPHDDRSAGFHSKAQLTEHLLTRPHHCPVCRAGFADRRNLGRHLATHGSDNPHECPECRASFSLDAYLKRHMLTHTRHRLLRCSFCPAEFVERGNLGRHVATHASARPFRCPLCDAAFSLKGALKRHLDVHSGEKRFECDVCVSRFADKRNLERHRNNHKAERPFKCSVCSADFSRKNYLEKHVLVHTGEEPFRCPLCAARFLLGGSLRRHMLVHSRDRPFACRFCNASFSKRDALTRHMHVHLSSPSACLHVAEVVRGGVDKGEGMVHASVMVPGSIAENLRGPGVAGKTSTSACSPGPWAWESELGSPDEAVTPAAVHCISCFLCKSASRHTTSLPPLSSQRCALLSLGLAPGSFSHLGSVLARPLSPFCGLLLVLLLPPSALLASLDSRRDDMRQMQPPCLSELYLGLQVFPPSIPFLGRELNHPLLNQWGLPPLNSSLDVAGLECVLDSRLSHKSTASNALIKVQFFRRPVTRHAGFQESATTHKHTHPWFVQHTEFHKQFCVHAR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00189286;
- 90% Identity
- iTF_00189286;
- 80% Identity
- iTF_00189286;