Bros090380.1
Basic Information
- Insect
- Bacillus rossius
- Gene Symbol
- -
- Assembly
- GCA_032445375.1
- Location
- CM063655.1:13162635-13166590[-]
Transcription Factor Domain
- TF Family
- CSD
- Domain
- CSD domain
- PFAM
- PF00313
- TF Group
- Beta-Scaffold Factors
- Description
- In molecular biology, the cold-shock domain (CSD) is a protein domain of about 70 amino acids which has been found in prokaryotic and eukaryotic DNA-binding proteins. When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees Celsius, a 4–5 hour lag phase occurs, after which growth is resumed at a reduced rate.During the lag phase, the expression of around 13 proteins, which contain cold shock domains is increased 2–10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.13 6.8e+03 -0.3 0.0 21 39 140 158 135 171 0.77 2 28 0.04 2.1e+03 1.3 0.0 16 39 156 179 148 190 0.82 3 28 0.016 8.5e+02 2.6 0.0 16 39 198 221 192 233 0.86 4 28 0.0093 5e+02 3.3 0.0 16 39 219 242 212 253 0.85 5 28 0.014 7.4e+02 2.8 0.0 16 39 240 263 233 275 0.84 6 28 0.014 7.7e+02 2.7 0.0 16 39 261 284 253 296 0.85 7 28 0.0099 5.2e+02 3.3 0.0 16 39 282 305 275 315 0.86 8 28 0.11 5.6e+03 -0.0 0.0 16 39 303 326 296 337 0.84 9 28 0.24 1.3e+04 -1.2 0.0 16 38 324 346 317 357 0.84 10 28 0.028 1.5e+03 1.8 0.0 16 39 364 387 350 399 0.83 11 28 0.02 1e+03 2.3 0.0 16 39 425 448 411 460 0.83 12 28 0.27 1.4e+04 -1.3 0.0 27 39 472 484 469 496 0.77 13 28 0.1 5.4e+03 0.0 0.0 16 39 482 505 475 516 0.83 14 28 0.014 7.3e+02 2.8 0.0 16 39 503 526 495 538 0.85 15 28 0.017 8.9e+02 2.5 0.0 16 40 524 549 524 562 0.83 16 28 0.016 8.7e+02 2.6 0.0 16 39 566 589 562 601 0.85 17 28 0.031 1.6e+03 1.7 0.0 16 39 587 610 585 622 0.82 18 28 0.096 5.1e+03 0.1 0.0 16 39 608 631 601 643 0.83 19 28 0.24 1.3e+04 -1.2 0.0 16 38 629 651 622 663 0.84 20 28 0.028 1.5e+03 1.8 0.0 16 39 669 692 655 704 0.83 21 28 0.02 1e+03 2.3 0.0 16 39 730 753 716 765 0.83 22 28 0.26 1.4e+04 -1.3 0.0 27 39 777 789 773 802 0.78 23 28 0.096 5.1e+03 0.1 0.0 16 39 787 810 780 822 0.83 24 28 0.015 8.2e+02 2.6 0.0 16 39 808 831 804 842 0.84 25 28 0.013 7e+02 2.9 0.0 16 39 829 852 822 864 0.84 26 28 0.018 9.5e+02 2.4 0.0 16 39 871 894 869 905 0.85 27 28 0.027 1.4e+03 1.9 0.0 16 39 892 915 885 927 0.83 28 28 0.12 6.5e+03 -0.2 0.0 16 39 913 936 906 948 0.83
Sequence Information
- Coding Sequence
- ATGGTGGAAGGTTCCTGCAGCGAGGATCGAGGCGGAAGGCAGTCTAGCCCAAGCGAAGAAAGTTCCAGCAGTTGGTGGAGCAGTCAGCTGGAGGGCTCAGCAGATGTATCACTGCAGAGTCGCATTACCAGCAGACCTCGTGCTGCCAAGCGCAAGAGAAGCAACAGCGGCCAGGCGAAACAATCAGGAAACTCATTGAAGCCTCGAAGCTACAGTGGACTTGTAAAGCGATGGCTCGTATCCAACCCTTTTTCAGAAGATTTGCAGCACTCGACCAAGCACAGTAGTAGACCCTCAGCATGCAAGCAGTTCCGACATGCAGAGGTGCAAACAGAGTGGCCTGAGGATGGTAGGGGAGGCTATGCATATGAGGCTCTCGTCATGTGCAGACACACAGAGTGGCTTGAGGGTGGTAGGGGAGGCTGTGCCTGCAAGGCTCTCGTCATGTGCAGACACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGCCTGCGAGGCTCTCGTCATGTGCAGTCACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCATCATGTGCAGTCACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCGTCATGTGCAGACACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGCCAGCGAGGCTCTCGTCATGTGCAGTCACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCGTCATGTGCAGACACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCGTCATGTGCAGACACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGCCAGCGAGGCTCTCGTCATGTGCAGTCACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCATCATGTGCAGTCACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCGTCATGTGCAGACACACCGAGCAGCCCCAATGTGCAGAGGTGCAAACAGAGTCGGCCAAGGGTGGTAGTCACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGCCTGCAAGGCTCTTGTCATGTGCAGACACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCGTCATGTGCAGACACACCGAGCAGCCCCAATGTGCAGAGGTGCAAACAGAGTCGGCCAAGGGTGGTAGTCACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGCCTGGAAGGCTCTTGTCATGTGCAGACACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCGTCATGTGCAGACACACAGAGCAGTCCCAATGTGCAGAGGCTCTCGTCATGTGCAGACACACAGAGTGGCCTAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCATCATGTGCAGTCACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCGTCATGTGCAGACACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCGTCATGTGCAGACACACAGAGTGGCCTAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCATCATGTGCAGTCACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCGTCATGTGCAGACACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGCCTGCGAGGCTCTCGTCATGTGCAGACACACAGAGTGGCCTAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCATCATGTGCAGTCACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCGTCATGTGCAGACACACCGAGCAGCCCCAATGTGCAGAGGTGCAAACAGAGTCGGCCAAGGGTGGTAGTCACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGCCTGCAAGGCTCTTGTCATGTGCAGACACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCGTCATGTGCAGACACACCGAGCAGCCCCAATGTGCAGAGGTGCAAACAGAGTCGGCCAAGGGTGGTAGTCACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGCCTGGAAGGCTCTTGTCATGTGCAGACACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCGTCATGTGCAGACACACAGAGCAGTCCCAATGTGCAGAGGCTCTCGTCATGTGCAGACACACAGAGTGGCCTAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCATCATGTGCAGTCACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCGTCATGTGCAGACACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCGTCATGTGCAGACACACAGAGTGGCCTAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCATCATGTGCAGTCACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGAATGCGAGGCTCTCGTCATGTGCAGACACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGCCTGCGAGGCTCTCGTCATGTGCAGACACACAGAGTGGCCTAAGGGTGGTAGGGGAGGCTGTGAATGCAAGGCTCTCATCATGTGCAGTCACACAGAGTGGCCCAAGGGTGGTAGGGGAGGCTGTGCCTGCGAGGCTCTCGTCATGTGCAGTCACACAGAGTGGCTCGAGGGTGGTAGGGGAGGTTGTGCCTGCGAGGCTCCCTTTACCTTCCTCCAGAACCACTTGTAG
- Protein Sequence
- MVEGSCSEDRGGRQSSPSEESSSSWWSSQLEGSADVSLQSRITSRPRAAKRKRSNSGQAKQSGNSLKPRSYSGLVKRWLVSNPFSEDLQHSTKHSSRPSACKQFRHAEVQTEWPEDGRGGYAYEALVMCRHTEWLEGGRGGCACKALVMCRHTEWPKGGRGGCACEALVMCSHTEWPKGGRGGCECEALIMCSHTEWPKGGRGGCECEALVMCRHTEWPKGGRGGCASEALVMCSHTEWPKGGRGGCECEALVMCRHTEWPKGGRGGCECEALVMCRHTEWPKGGRGGCASEALVMCSHTEWPKGGRGGCECEALIMCSHTEWPKGGRGGCECEALVMCRHTEQPQCAEVQTESAKGGSHTEWPKGGRGGCACKALVMCRHTEWPKGGRGGCECEALVMCRHTEQPQCAEVQTESAKGGSHTEWPKGGRGGCAWKALVMCRHTEWPKGGRGGCECEALVMCRHTEQSQCAEALVMCRHTEWPKGGRGGCECEALIMCSHTEWPKGGRGGCECEALVMCRHTEWPKGGRGGCECEALVMCRHTEWPKGGRGGCECEALIMCSHTEWPKGGRGGCECEALVMCRHTEWPKGGRGGCACEALVMCRHTEWPKGGRGGCECEALIMCSHTEWPKGGRGGCECEALVMCRHTEQPQCAEVQTESAKGGSHTEWPKGGRGGCACKALVMCRHTEWPKGGRGGCECEALVMCRHTEQPQCAEVQTESAKGGSHTEWPKGGRGGCAWKALVMCRHTEWPKGGRGGCECEALVMCRHTEQSQCAEALVMCRHTEWPKGGRGGCECEALIMCSHTEWPKGGRGGCECEALVMCRHTEWPKGGRGGCECEALVMCRHTEWPKGGRGGCECEALIMCSHTEWPKGGRGGCECEALVMCRHTEWPKGGRGGCACEALVMCRHTEWPKGGRGGCECKALIMCSHTEWPKGGRGGCACEALVMCSHTEWLEGGRGGCACEAPFTFLQNHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -