Bros082098.1
Basic Information
- Insect
- Bacillus rossius
- Gene Symbol
- Rfx7
- Assembly
- GCA_032445375.1
- Location
- CM063652.1:14973098-14984313[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-22 1.4e-17 66.5 0.1 31 78 17 64 7 65 0.95 2 2 0.18 6.6e+03 0.3 0.0 12 39 436 463 431 471 0.81
Sequence Information
- Coding Sequence
- ATGGTTGGTATTCCATCGCAGCGCAAGCGCTGGCCAGCCGACGTTGGCGCGTACTGCGGCAGCAACCACATGAAGCCCCTGTCGACGGCCGACTTTGGGAAGGTGATGAAGCAAGTGTTCCCCCGGGTGCGGCCGCGGAGACTCGGCACCCGGGGCAACTCGCGGTACTGCTACTCCGGCCTGCGCAAGAAGGTCAAGCTGAGCGTGCCACTGCTGCCGGATCTCGGAGGCGAACCCACAATGGCGAGCAAGGATGCGCCGACGACAGCTGTGACTGGGCAGCCAACAGGCAAGCAGTGCTCGGACGACGAGCTGAGCAAGTGCGTGTCGCACCTGGTCCTCGAGTGGGCGGAGAAGCTGCTGGACCAGAAGTTCGACCGGCTGCAGGACCTGGCGTGCCACCTGCTGCAGAAGATGTGCTTCGACACGTTCTCTGCGCCCGCGCTCATGCTCGCTTCCATCACGGGCCTCGCCAAGCCCAAGGGCAAAGATGTAAGTAAGCACAGGGAAACACAGCTGCAGCTGCAGAGGAAGCTGCATGAACGATTCGTTATCAGAGAACAGAAGAGAAAATTACAGaGTCAGCAGCTTGTCCCAGGAGAGTCGAAGGGTGCATCGCCAGAGAAGGCCAAGTCGAAAAGAGTGAAACTGAGCGACGGCACGGGAGACCAGGTAAGGGAGGTTGTCGTCCCGATCCTCACGCCGAAAGTGGAGCCTGAGCTGAGTGGtggcggcggcagcagcagcagcgttATCTGTGATAAAGTCAAACTAACCGTACCCAGTGCTGCTGCTCCGTCTGAACAGACGGCGAGACCCGAAACCTCATCCGCCGGTCCGAGCGGAAATAACTGCAAGCCGGCTCGTGATAAGAACATTAGCGATTCGTTATCAACCGAAAGCTCTCATTACAGTGTAAACAACCTCTCCAAGGGACAGAATTCCGCTACGTTTCCCCCACTCCAGGAAGTCAACGCCAACACGGTGTCATTGTCGCGCAACGGCGAGAAGTGCGCGCAATTACACGGTGAACTGCCTGTGCCTGCCACCTCAAGCATCGATGCCACCAAACCTGCCTCGGTGGCGAATAAGCTTCCCATTCCGAGACTTCCCAACCCAAACAAAAACAAACGGCTAGCTAATGTGATCATCTTCCCTCCATCGACTACGGCAACGATTCTGCAACAGTCCCAGAAGAAGTGCAAACCCATACAGCCAAAACCACTAGAGGAAGTAAAGAAGGAAGCCCGGGATCCGAGTGAGATGGTTCCAGGAAAAGGACCAGATGACTTGGCAGCAGCTGTTGTTAACTGTGATAAAGGAATTAGTGTAGATAGGAATGAAAGTACAAATCATTATTCGACTGAAATAACCCAAGAAGGTTTTAGTGATGCTACGGCAAAGACTGCACTCACAATAGAGGCTGTGAAGAATGGTACAAATGAAGAAAGTATTAGGTGTTTAGCAAATGATGCCCTTCTAGCAGATTACTTTCATGGAGGAAACAATTCGCAAGAGCAGGAGGAGGAACTAATAAAATACTTTCAACACCAAAACAGTTCCTCAAGTAACGAAGAAGTTGAAGTTTTGAGACAGAATCTGCAAACGCCGGAGGAGTTACCCAGCCCTGCCAATAAATGTGATCAGCTGTCGCAGCTGCGTTTGCTGCTCGAACGTAATTTGAAACCCACTCGATCTCATAGCACAAGTGTTCAGAAGTCTGCGGAAACAGACAGAGGTAAAATAAGTTTCTCTGCCCCATCTTCGGCAGTTTCTGTGATGCCTTCATCTGTAAATCATGCCATTTCAACGGAAAGCAGCATATCCACCTCGCTCGAGGGTAATGAACTTGCGATGATGGCCTCGAAAAGTTTGTCCCTGCTGTCTCGACGTAACCAGCAGCACAGTCGCGCCGGTGGCAAGCCAAACCTCACACTGCCATCTTTGATGACGACCAGCCACAACTCTAACTTGGCCACCAGACGTCGAGTCAGTTTCGAAACGTCGGTGATGGAACGTGCCGTGCCCCAGAGCCCCAACACTCGTAGTTTCACTCCCATATCTCCGGGACCGTACTCTCCGGTCGGAATCTCGAAAAACTCGAAATCATTCAGTGCTAACGCCAGTCCTTTCGTGTCGCCACGCAACACGCCGGTACTTCGCTCCAGGCACAACTGCATTCAAGCAGGTAGCTCACAGCCCTGTTCTTACGTCGTCGCTTCAAACGGGCCTAGGTGCAGGCAGCCTGTTCCCGCCAGGATTGTCCGCTCCAACTCGGTGAACAGCCACAACATATCCACCGCGTACAGGCTGGCCCGGCCACAAGCCAATACCTTCGCCATCCCTGGCAGCTTCCCGTTGGAGACTTCGGAGCTCAAACAGAACCTGCCTGCGTCTCTAAAAGCATTACCCCCGATGTCGCCCCTGTCGTTATCTGCCCCGCAGTCGCCGATGTTAAACTACCAACATACAAATATTGGGATTTGTAAAAGTGAGAGCGACATGGTCTCGACGTACAGCGAAAGCTTGTTGAAGGAAGCGGTAAAGGGTGGTCACATTCCGCAGAGCAGTGGTGTGACGAACTGCAACGGTGTTGGCGTCGCTCCATCGTACGGCATGGATCCGCTAGCCCAAGAAGTCAGTCAGATCTTCCAGGACGCCGGTTCGGACCAGAAAAACATAGAGGCGCTGTTGGCTGCCCTGCCCAGCTCGTCCCAAATGTCGTACCGCTCCCAGTCCGTGCCGCTGCACAGGATGATGTCCGGCAGCACGCTCGTGTCGCCCCAGTCGACCCAGCCTTCCCCGCTGTACCTGGGACACCAGCAAGCGTTCACCTTCAGCAGCGTGAGTTCTACCGCCAGCTCTGTCGCCCCGACCCCGGTCCCGAGCGAGTTCATGGACTTCACGGGCCTGGGTGAACCCGAGGCCGAAAACGAAGAAACGGAAGGCATCAACACTGAGAGTTTGGCGCAGATTCTGAACATCCTGAACAGCTCTGCGGTGCAGAAGGTGGTTGATAATGCCAGTCTCGCGATAGGCATCGGTGAAGGAGACGCGGAAAGCAATAACTTTGCACTGAATGGCCATCACAGAAATTCTTACTCTTCGAGATCCTACCCCAACACACCTGTTCCCTACAAAAATTCCTGTAACCGTGACCTTTTAGTTTCGTCTTTCAATTTAAATCTGGATGACAACTTCGGCACGGTGTCTCGTTCGTATCCCTCGACTCCTTTGTTAGGATTATCTTTCTTGAACGGTGATGAGATGGGGCCTTTTCAGAGTGTAACCGAGAGCATGACGCCAAGTCTGGTAAACACGCAGCACGTTCAGGAAGGACTTACCAGCAGTTCAGCAAGGCGAAACGTCAACTTGATGCCCTCCTTTTGTGTTGACGAACTGCAGTTGGATAGCCTGGATGACTTCCAGTCGTGTGATCCGTTGTCGCAGCTGGTGCAAGAAGTTCAAGATGGTGAACAGATGGGCGCGGGTTGA
- Protein Sequence
- MVGIPSQRKRWPADVGAYCGSNHMKPLSTADFGKVMKQVFPRVRPRRLGTRGNSRYCYSGLRKKVKLSVPLLPDLGGEPTMASKDAPTTAVTGQPTGKQCSDDELSKCVSHLVLEWAEKLLDQKFDRLQDLACHLLQKMCFDTFSAPALMLASITGLAKPKGKDVSKHRETQLQLQRKLHERFVIREQKRKLQSQQLVPGESKGASPEKAKSKRVKLSDGTGDQVREVVVPILTPKVEPELSGGGGSSSSVICDKVKLTVPSAAAPSEQTARPETSSAGPSGNNCKPARDKNISDSLSTESSHYSVNNLSKGQNSATFPPLQEVNANTVSLSRNGEKCAQLHGELPVPATSSIDATKPASVANKLPIPRLPNPNKNKRLANVIIFPPSTTATILQQSQKKCKPIQPKPLEEVKKEARDPSEMVPGKGPDDLAAAVVNCDKGISVDRNESTNHYSTEITQEGFSDATAKTALTIEAVKNGTNEESIRCLANDALLADYFHGGNNSQEQEEELIKYFQHQNSSSSNEEVEVLRQNLQTPEELPSPANKCDQLSQLRLLLERNLKPTRSHSTSVQKSAETDRGKISFSAPSSAVSVMPSSVNHAISTESSISTSLEGNELAMMASKSLSLLSRRNQQHSRAGGKPNLTLPSLMTTSHNSNLATRRRVSFETSVMERAVPQSPNTRSFTPISPGPYSPVGISKNSKSFSANASPFVSPRNTPVLRSRHNCIQAGSSQPCSYVVASNGPRCRQPVPARIVRSNSVNSHNISTAYRLARPQANTFAIPGSFPLETSELKQNLPASLKALPPMSPLSLSAPQSPMLNYQHTNIGICKSESDMVSTYSESLLKEAVKGGHIPQSSGVTNCNGVGVAPSYGMDPLAQEVSQIFQDAGSDQKNIEALLAALPSSSQMSYRSQSVPLHRMMSGSTLVSPQSTQPSPLYLGHQQAFTFSSVSSTASSVAPTPVPSEFMDFTGLGEPEAENEETEGINTESLAQILNILNSSAVQKVVDNASLAIGIGEGDAESNNFALNGHHRNSYSSRSYPNTPVPYKNSCNRDLLVSSFNLNLDDNFGTVSRSYPSTPLLGLSFLNGDEMGPFQSVTESMTPSLVNTQHVQEGLTSSSARRNVNLMPSFCVDELQLDSLDDFQSCDPLSQLVQEVQDGEQMGAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -