Belo041835.1
Basic Information
- Insect
- Baccha elongata
- Gene Symbol
- -
- Assembly
- GCA_951217065.1
- Location
- OX578273.1:12581840-12582562[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-09 1.5e-06 29.4 0.0 1 38 17 54 17 59 0.92 2 2 2 1.9e+03 0.3 0.1 11 22 137 149 137 150 0.81
Sequence Information
- Coding Sequence
- ATGCCgacagtttataaaaaaaaatcatctgcaAATCGTGCACAATGGACACAAGACCAACTCACAGCAGTCATTGAAGCTGTCCATGCAAAAACAATGTCCATAAAAGCAGCTTCAAAGCACTTTTCAATTCCTTTCACCACCCTTAGACGCCGCATTAAAAATCCAGACGTTAAAAAACCTGCTTTGGGATCCGTATCCTGCTTAGGGGAAGAAAGGGAATTGAAAATTGTgtgtcatataaaaaaaaaactccaggcACACGGATTTGCTCCATCTAAGAAGGAAGTGTGCCAAATGGCCTATCGATTGGCAGAAAAGTGCGAGATAAGGCACAAAttcaacaatttgaaaaaagaagctGGAAAGGACTGGTTCATTTTGTTTATGAATCGCCATCCTGATCTAGCAGTTCGAAAATCAGAGGGAGTGTCGCAGTCACGAGCCAAAGCTATGTCTAGGACAGAAGTGTCTAACTACTTCCAATTGATGGAAAAAACCTTGACGGAAAATAATTTGCTGGACAAACCCGGTCATATTTATAATATGGATGAAACTTGGTGTCAACTCAACAATCGGCCCTCTTTCGTTATTGCAGAGAAAGGATCGCGCAACGTTACTGCAATAACATCGGCAGAAAGAGGTGAGACAATAACAGTCATTGCATGCTGCAACGCAGAAGGAAATTTCTTACCACCAGCCTGTGTTTTTAAAGGTAACTAA
- Protein Sequence
- MPTVYKKKSSANRAQWTQDQLTAVIEAVHAKTMSIKAASKHFSIPFTTLRRRIKNPDVKKPALGSVSCLGEERELKIVCHIKKKLQAHGFAPSKKEVCQMAYRLAEKCEIRHKFNNLKKEAGKDWFILFMNRHPDLAVRKSEGVSQSRAKAMSRTEVSNYFQLMEKTLTENNLLDKPGHIYNMDETWCQLNNRPSFVIAEKGSRNVTAITSAERGETITVIACCNAEGNFLPPACVFKGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00187994;
- 90% Identity
- iTF_00187994;
- 80% Identity
- -