Belo032790.1
Basic Information
- Insect
- Baccha elongata
- Gene Symbol
- -
- Assembly
- GCA_951217065.1
- Location
- OX578272.1:161296706-161297427[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-09 1.3e-06 29.6 0.0 1 38 17 54 17 59 0.92 2 2 1.8 1.7e+03 0.5 0.1 11 22 116 128 116 129 0.81
Sequence Information
- Coding Sequence
- ATGCCgacagtttataaaaaaaaatcatctgcaAATCGTGCACAATGGACACAAGACCAACTCACAGCAGTCATTGAAGCTGTCCATGCAAAAACAATGTCCATAAAAGCAGCTTCAAAGCACTTTTCAATTCCTTTCACCACCCTTAGACGCCGCATTAAAAATCCAGACGTTAAAAAACCTGCTTTGGGATCCgcACACGGATTTGCTCCATCTAAGAAGGAAGTGTGCCAAATAGCCTATCGATTGGCAGAAAAGTGCGAGATAAGGCACAAAttcaacaatttgaaaaaagaagctGGAAAGGACTGGTTCATTTTGTTTATGAATCGCCATCCTGATCTAGCAGTTCGAAAATCAGAGGGAGTGTCGCAGTCACGAGCCAAAGCTATGTCTAGGACAGAAGTGTCTAACTACTTCCAATTGATGGAAAAAACCTTGACGGAAAATAATTTGCTGGACAAACCCGGTCATATTTATAATATGGATGAAACTTGGTGTCAACTCAACAATCGGCCCTCTTTCGTTATTGCAGAGAAAGGATCGCGCAACGTTACTGCAATAACATCGGCAGAAAGAGGTGAGACAATAACAGTCATTGCATGCTGCAACGCAGAAGGAAATTTCTTACCACCAGCCTGTGTTTTTAAAGGTAACTAA
- Protein Sequence
- MPTVYKKKSSANRAQWTQDQLTAVIEAVHAKTMSIKAASKHFSIPFTTLRRRIKNPDVKKPALGSAHGFAPSKKEVCQIAYRLAEKCEIRHKFNNLKKEAGKDWFILFMNRHPDLAVRKSEGVSQSRAKAMSRTEVSNYFQLMEKTLTENNLLDKPGHIYNMDETWCQLNNRPSFVIAEKGSRNVTAITSAERGETITVIACCNAEGNFLPPACVFKGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00187998;
- 90% Identity
- iTF_00187998;
- 80% Identity
- -