Aio016662.1
Basic Information
- Insect
- Automeris io
- Gene Symbol
- -
- Assembly
- GCA_036320925.1
- Location
- JAUDJH010000017.1:6131945-6134810[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.027 7.9e+02 1.0 0.2 13 44 170 202 167 206 0.68 2 6 2.5e-05 0.73 10.7 0.2 21 52 207 238 202 239 0.87 3 6 0.0054 1.6e+02 3.2 0.1 21 44 235 258 231 262 0.89 4 6 3.6e-05 1.1 10.2 0.7 21 44 263 286 255 290 0.87 5 6 1.3e-05 0.39 11.6 0.2 21 45 291 315 286 322 0.90 6 6 0.00013 3.8 8.4 0.6 21 48 347 373 336 379 0.84
Sequence Information
- Coding Sequence
- ATGAGTCCTAAAAATTATTCTGAAGCTTTTAATAACACCAATATCAAAACGGAGAATGGTTTACTACTAAGGAGAGAACAAATAGAGAATGGAAATATAGCAGGTAGTCTAGAAGAAGTTGTTGTGAAGAAGGAAGGAGATGTACTAAACAATTATCCAAATAATCTGTACATTGGTCCATTCGGAAAGAGCTTCTATGTTCAAACAGGTACACCACCATCCACGGATATTAAGACAGAATTCTACAAGGGGCAGCATGAAGAAATCCAAATAAAGGAAGACCCTCTTATCTCACCATTCGAGCCAAGTTGTCAGTTGACAGAACAGATTTCGATCGAATTTGACAATCAACTAAAGGTTGAGGGTCATCCAATAATGGGCAATGCTCAGACTGGAGAttcaattgataaaaatattaagcttgaattTAATgaccaactaaatattgaaagtCATCCAATGACCAATACTCAAAGGGAGGATTTGTTACATTACAGAAATAATACTGACAAGGCAATCAAAAAATCACAGCCAGGAAAGAAATTATATATCTGTGTCATCTGTGACTATCAATTTTGTGACAAAAGCAGCTTGAGACGTCATAATAGAATGCACACTGGAGAAATGCCATTCGCCTGTGACATTTGTACCTACAGATCTAGACAAAAATGCAATCTAATCAAACATTTGAGGATGCATACTGGTGAAAAGCCATTCTCCTGCAAGCTCTGCAATTATAAATGCAAAGATAGCGGTAGTCTCACTCGACATAACCGAATACACTCCGGTGAGAAACCGCTTGCATGTAATGTCTGTGATTTTAAATGTAGGGATAGGAGAAACTTGAGGGATCATGCTAGAACGCATACTGGCGAGAAACCTTATTCATGTCAGTACTGTAATTACAGATTTAAGCAGAGCGCAGGGTTGAGAAGACATCTGAAAGGTCACTCTACGGAGAAGAAATATTCTTGTATCATCTGTGAATATAAATGCTACGATAAAGGCAGCTTGAATAGACACGTAAGGACGCACACTGGAGAAACTCCTTATGCATGCAGTATCTGTGGTTACAAATGTAAACAGAAATGCAATTTAAATAAGCACATGCGGAGGCACACTGGTGAGAAGCCGGTGCCTAGCAGCGGATGTAAAATAAGCAGGAAAAACATATGCATGAAGATTCGTAGTGATAAGTAG
- Protein Sequence
- MSPKNYSEAFNNTNIKTENGLLLRREQIENGNIAGSLEEVVVKKEGDVLNNYPNNLYIGPFGKSFYVQTGTPPSTDIKTEFYKGQHEEIQIKEDPLISPFEPSCQLTEQISIEFDNQLKVEGHPIMGNAQTGDSIDKNIKLEFNDQLNIESHPMTNTQREDLLHYRNNTDKAIKKSQPGKKLYICVICDYQFCDKSSLRRHNRMHTGEMPFACDICTYRSRQKCNLIKHLRMHTGEKPFSCKLCNYKCKDSGSLTRHNRIHSGEKPLACNVCDFKCRDRRNLRDHARTHTGEKPYSCQYCNYRFKQSAGLRRHLKGHSTEKKYSCIICEYKCYDKGSLNRHVRTHTGETPYACSICGYKCKQKCNLNKHMRRHTGEKPVPSSGCKISRKNICMKIRSDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00187482;
- 90% Identity
- iTF_00187482;
- 80% Identity
- iTF_00187482;