Apul025958.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- -
- Assembly
- GCA_905475315.1
- Location
- FR997788.1:841587-844292[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 6.2 6.4e+02 1.9 0.3 2 20 164 182 163 184 0.90 2 19 3.2e-06 0.00033 21.7 2.3 2 23 192 213 191 213 0.97 3 19 0.7 73 4.9 0.3 2 23 217 237 216 237 0.91 4 19 0.062 6.4 8.2 0.9 1 23 242 265 242 265 0.90 5 19 3.2 3.3e+02 2.8 1.2 2 19 273 289 272 292 0.90 6 19 0.0064 0.66 11.3 1.5 2 23 324 346 324 346 0.96 7 19 0.00027 0.028 15.6 1.0 1 23 352 375 352 375 0.97 8 19 0.15 15 7.0 0.7 1 21 379 399 379 400 0.94 9 19 0.039 4 8.8 1.0 1 23 435 458 435 458 0.92 10 19 8e-05 0.0083 17.3 0.1 2 23 471 492 470 492 0.97 11 19 0.00066 0.068 14.4 1.3 1 23 498 520 498 520 0.98 12 19 0.018 1.9 9.9 0.3 2 23 526 546 526 546 0.97 13 19 6.1e-05 0.0063 17.7 0.6 2 23 552 573 552 573 0.97 14 19 1.8 1.9e+02 3.6 0.7 3 23 579 598 578 598 0.90 15 19 6.4 6.7e+02 1.9 3.2 2 23 617 638 616 639 0.93 16 19 2.3e-05 0.0024 19.0 3.1 1 23 645 667 645 667 0.98 17 19 0.00065 0.068 14.4 0.9 2 23 674 695 673 695 0.96 18 19 0.077 8 7.9 0.8 1 23 701 724 701 724 0.93 19 19 0.0066 0.68 11.3 0.5 2 23 730 752 730 752 0.95
Sequence Information
- Coding Sequence
- ATGGAACGTTTCAAAGAAAAATTAAGGAATGTTCTTCATAGCACACACTTTTGTGGGATTTGCTTAGAAAAAGAAGAAAATATAAGCACCCTTGATGATAGTTTCCAAATAATCGTAAATGAACAATGTTATAGTAAAACACTGAAAGAAATAGTAGCAGTTGTTTTTAAAAACGCTGAAAACATATTAACAAGCACTCAAATATGTAATAATTGTTCAGAAAAACTTATCCAGTCATATATCTTTATAAAGAATGCTGAGGATTCATCTGAAATGATAAAGAACTATATTATAAATGATCTATTTAGTAAATCAAATGATATATTCAATCATTTGACCAATTCAAGTATTGAAAGCTCCAATGTTGTAATTGTACTAGAAAATAATTCTCATGGCTTTTATGGTCAAGACAGTATACAAAAAACTACAATAAAAACTGAAGACCATGAAATTAAAGAGAAAGTGCATAAACCAAAAAAGTCTACATTAAAATGTCTGACCTGCAATATGAAACTGCCCTCGCATAGAGCATTAGTGTTACATAAAATTAAATGCAATGAAAAATGTTTAGTAAAATGTGAAGAGTGCTTCAAGGCATTTAGAAACAAGCACAACTTAAATGCACATTATAAAGTGCACTCTAAAGTAAAATGTGAGGTGTGCCAGGAATTAATTAACAGTACCAAATTAATTGATCATATGAAAAAACATAGTGATTCTACACACAAATGTGTACAATGTAATCAAGATTTCATTTCTTTAAATGCTTTACAAATTCATGACAGGATGTTCCATCAAATAAAAGATGAAAACTCACAATGTTTGATGTGTTTCCAGAAGTTTTCTCCAGAAGAGTTAAAACTACATAACTGCAAATTTGGGTGTCCGGAATGTTCTGAAACCCCCTGCATGCATTACAAGTATTTAATGTTTTATAGAGAACAGATGCCTAGTAATAATTTAAAAGCAAAATGTTTGGACTGCGATTATGTTTGTAGAAAAAAGGATTCCCTATTAGGACATGTTAATCGGGAACATTTGAAACATCATCCATATTCTTGTGACAAATGTGGACAGCAGTTCTACTCCAAATTGTTCTTAAGAGCTCATATAAGTAGGATCCACGAAGATAGGTTTTTTTGTCAGTACTGTAACTCTGAATTCAGTAATATGAATTCTTACGACAATCATATCAAAGCTTGTGGGGATATCAAAAGGAATTTTGTGTGTACAGATCACCCTGCATCTTTTGATTCCTATGAGAAATTGAATGAACATGAAAAGCGTAGACACATCAATATTTTTCCATGTGAAATGTGTAATAAAACTTTTCTCAAAGAATCTAAAAGGAAAGAGCACATGGTCAAAGTACATAGTGGCATTCAAGTTAAAAACAAAGATTCGAATGTAGAATGTGTCGTTTGCCAGGAAAAGTTTGATACCAAAGGAGATTTAGTCCAACATATGAAATCTCACGGTCCAAACATTACATATCCGTGTAAGATTTGTAATACCGAGTATGAGACCTTGAGACAATTTCGCGCGCATAATAGAAAACATGGCGGCCCATTCGCAACTTGTGAGGTTTGCGGAAAAGAAATGAGAGCAATACTTCTGAGAAAACATATGAGTACCCACAGGGACAGTATCGAGACGTGCGAGACTTGTGGCAGGTCTTTTGCAAACATAACATTACTGAAATACCACCAAAAAGTTCATTTAGATAGCGTGGCTTGTCAGAAATGTAAGAAGTTGATAAACCCAGCGCGATTACGGAGACATTTAAAAGGGCATCTTATGGAAGAAAATCCGAACTTAAAAAGCGCGAAAAAACAGACACCGAAGTTAAAATGTGAACAATGTGACTACATAACGTGGAACAACACCCTTCTTGAATGCCACATGAATCGTCACCATTTAAAGATCAAGCCGTATGTATGTCATATATGCAGCAAAGACTTTATAGGCAAACATTTACTAAAAAAGCATATTGAAACCCATCAGTTAGACAAATCTGTTGTTTGCATGGTTTGTTTGAAGAGTTTTGCGAATTCAGCGTGCTTAAAAATGCATTTACGCTTGCATACGGGCGAAAAACCTTTTACTTGCGAGGTTTGTGGCGATAGATTTCGCTCATCAAGTATTATGAATGTCCATAAGTTAAAGAAACATTCGGATAAGAGTAATACGTGTCCGTTGTGTTCGAATAAGTTTTATACTGTTAGGGATTTGAGGAGGCATGTGATCAAAGTGCATTGGAAGCAGAAGAACAAGCGGTTTGATCCGCGAGAGCTGAAAGGCTTAGATAAGGAGCACTACCATTTGTTTCATGATGGAAGGAGGGTCAAAGTTGCGGAGGAAGACGTTGATTTTTATATGCCGTGCTGA
- Protein Sequence
- MERFKEKLRNVLHSTHFCGICLEKEENISTLDDSFQIIVNEQCYSKTLKEIVAVVFKNAENILTSTQICNNCSEKLIQSYIFIKNAEDSSEMIKNYIINDLFSKSNDIFNHLTNSSIESSNVVIVLENNSHGFYGQDSIQKTTIKTEDHEIKEKVHKPKKSTLKCLTCNMKLPSHRALVLHKIKCNEKCLVKCEECFKAFRNKHNLNAHYKVHSKVKCEVCQELINSTKLIDHMKKHSDSTHKCVQCNQDFISLNALQIHDRMFHQIKDENSQCLMCFQKFSPEELKLHNCKFGCPECSETPCMHYKYLMFYREQMPSNNLKAKCLDCDYVCRKKDSLLGHVNREHLKHHPYSCDKCGQQFYSKLFLRAHISRIHEDRFFCQYCNSEFSNMNSYDNHIKACGDIKRNFVCTDHPASFDSYEKLNEHEKRRHINIFPCEMCNKTFLKESKRKEHMVKVHSGIQVKNKDSNVECVVCQEKFDTKGDLVQHMKSHGPNITYPCKICNTEYETLRQFRAHNRKHGGPFATCEVCGKEMRAILLRKHMSTHRDSIETCETCGRSFANITLLKYHQKVHLDSVACQKCKKLINPARLRRHLKGHLMEENPNLKSAKKQTPKLKCEQCDYITWNNTLLECHMNRHHLKIKPYVCHICSKDFIGKHLLKKHIETHQLDKSVVCMVCLKSFANSACLKMHLRLHTGEKPFTCEVCGDRFRSSSIMNVHKLKKHSDKSNTCPLCSNKFYTVRDLRRHVIKVHWKQKNKRFDPRELKGLDKEHYHLFHDGRRVKVAEEDVDFYMPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01221865;
- 90% Identity
- -
- 80% Identity
- -