Basic Information

Insect: Autographa pulchrina
Gene Symbol: salm_1
Assembly: GCA_905475315.1
Location: FR997765.1:6704238-6730252[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.44 45 5.5 1.9 1 21 322 342 322 343 0.94

2 11 6.2e-06 0.00064 20.8 0.9 1 23 642 664 642 664 0.98

3 11 1.2e-05 0.0013 19.9 2.1 1 23 670 692 670 692 0.98

4 11 1.6 1.7e+02 3.7 3.0 5 23 990 1008 987 1008 0.92

5 11 1.3e-07 1.4e-05 26.0 1.2 1 23 1014 1036 1014 1036 0.97

6 11 0.00086 0.089 14.0 4.4 1 23 1046 1068 1046 1068 0.98

7 11 0.009 0.94 10.8 2.2 2 23 1247 1268 1246 1268 0.97

8 11 0.036 3.8 8.9 1.6 1 14 1274 1287 1274 1288 0.94

9 11 0.96 1e+02 4.5 0.0 10 23 1315 1328 1313 1328 0.93

10 11 5.5e-06 0.00057 20.9 1.7 3 23 1409 1429 1407 1429 0.96

11 11 6.6e-07 6.8e-05 23.9 0.5 1 23 1435 1457 1435 1457 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.44	45	5.5	1.9	1	21	322	342	322	343	0.94
2	11	6.2e-06	0.00064	20.8	0.9	1	23	642	664	642	664	0.98
3	11	1.2e-05	0.0013	19.9	2.1	1	23	670	692	670	692	0.98
4	11	1.6	1.7e+02	3.7	3.0	5	23	990	1008	987	1008	0.92
5	11	1.3e-07	1.4e-05	26.0	1.2	1	23	1014	1036	1014	1036	0.97
6	11	0.00086	0.089	14.0	4.4	1	23	1046	1068	1046	1068	0.98
7	11	0.009	0.94	10.8	2.2	2	23	1247	1268	1246	1268	0.97
8	11	0.036	3.8	8.9	1.6	1	14	1274	1287	1274	1288	0.94
9	11	0.96	1e+02	4.5	0.0	10	23	1315	1328	1313	1328	0.93
10	11	5.5e-06	0.00057	20.9	1.7	3	23	1409	1429	1407	1429	0.96
11	11	6.6e-07	6.8e-05	23.9	0.5	1	23	1435	1457	1435	1457	0.98

Sequence Information

Coding Sequence: ATGAACGCGTCCGCGCCACGTCGCTCCGCCGCCGCGCCTGGCCGCGCCGCACCGCGCCGCGCCGCTACCAGACCCACCGCTCATTTTGACGGTCAATTTAAAAATTTCACCCCCGCTTTGCCTAACGTTAACCAACATTATGCCGCTCTAACTAACTCTACATTGTCCGCGTACTTGACACCTGTTAGCAGTATCACATCGTTCGGTGATAATACACAGGCTTCGCGGGGCGACGGCGGCCGCCATCTAGCGGGCGTCAGCGCCGCCCACCGCCGCCTCGCACGCCGCCAACGGCCTCGCGACCACATGTCGCTTATGAATATGAGGCGTTATGATTATGAAAATATGCCCCGCCCCGAATATGGAATATGGAGGAGGGGGGCCTGTGAAGCGCGTGCGAATGGGCGAAGTTTGATTTATGAGCCGAGCGCGGCCCCGCCTCCCTGTCATAACCGTATACCTGGTGCGCGCGCGCGCTGCCGCCCGCCGCCCGCCGCTCGCCTCGCGCTCAGTCCCGCTTCAGATGGCGAGTGGTGCGCTCGGTCACACGCCGCGTCCGCTCCGTACCGTGTACTTCGTCCGAGCCGAGTAACCGGCGCCGCGAGTGCCCGTGGACCCGCCGCCTGCCATGCGCCGGCCCTGAGCCGAGTCCGCAGCGCCGCACCATGCCGCGCGTCAAGCCCTCCTGCGTCCGCCGCGTCTCCATCGTTGGACAATGTCGGGGTAGGAATATCCGCAACGGACACTAGGACCTTTTACAAAGTGCGTAACGCGGCGGCGGGCGGCGAGCGGCGCGCGACTCATGCTGCCGCTCCTGGCGAGCTGGTGCCGACTGCTCCTCTCACTAACACCAACAAACAGCCACCACTAATCCTTCTCCTTATTACAAGTGAAAGTTCCGGCTCGTGTTCCGAGGAAGATATAAACAATGCGTGTGATGAAACGAGAGACCGGCCTGAAGCGCACATGTGCCCGCGCTGTCAGGAACAGTTCGAGAACCTTCATGAGTTTCTGTACCACAAGCGACTGTGCGATGAGAAAGCATTGCAAATGGGCGAGGAACGAATGCATTCGGATCCCGAGGAAATGGTCGTTTCTGGCGACGAAGAAATGGATGGACCTAACAAACGCTTAGAACAAGTCCGACGGCATCGACAAGATGCGGAAAATAATAACAGCCTCGAAGATGGCGAGGCAGAAGTGCCTGAAGCCGACGTGCCGCCAGTCGGGCTGCCCTTCCCGGTGGCCGGCCATGTCACGCTCGAAGCTTTACAAAACACTAAAGTAGCCGTAGCCCAATTCGCCGCGACAACAATGGCAAACAACGCAGATAATGAGGCGGCGCTACATGAACTGGCCGTGCTCCAAAGCACGTTATTTACGCTCCAACACCAACAAGTGTTTCAGCTGCAATTAATACGCCAATTACAAAACCAGTTATCATTAACGCGGCGAAAAGATGACCAGCTCCCGAGCCCGCCACCGAGTGAACCAGAGCCAGCGCAAGCGGCCCCCGCTCAGTCACCGTCGCCGCCGCGTCCGCCACGGGAGCCCACTCCTGTCGCACCCACTCCCCCTACTAGTCAAAGCTTGCCGTCAACCCACTCGCATCTCACACCTAAGACGGAACCAATTACCGTTCCCAAACTCCCGACCTCATCTCCACCGATGATGTCCCATCCACCTTACAGCTCCATTTCCTCGTCATTAGCTTCTTCAATTATCACAAACAACGACCCGCCACCATCTCTCAACGAACCTAATACGCTAGAAATGCTACAAAAGAGAGCTCAAGAAGTGCTAGATAATGCGTCACAAGGTCTACTAGCTAATAATCTTGCCGATGAACTTGCTTTCCGTAAATCGGGAAAAATGTCACCCTATGATGGAAAATCAGGAGGAAGAAATGAACCCTTTTTCAAGCATCGTTGCCGTTACTGCGGAAAAGTATTTGGAAGCGACTCTGCGCTGCAAATCCACATTAGATCGCACACAGGTGAAAGACCTTTTAAATGTAATGTATGTGGATCACGATTTACAACCAAAGGGAATTTAAAAGTACATTTCCAAAGACACACAGCAAAGTTTCCACACGTGAAGATGAACCCCAATCCAGTGCCAGAACATTTGGATAAATACCATCCCCCACTGTTAGCGCAGTTGTCGCCGGGACCAATTCCTGGAATGCCACCACACCCACTTCAGTTCCCTCCGGGTGCGCCAGCTCCTTTTCCGCCAAGCTTGCCGTTGTACAGACCCCCACACCATGACTTACTGCCGCCTCGTCCGCTCGGAGACAAACCTCTACCACCTCATCCACTATTTACAATGCGAGAGGAACAAGACGCTCCGGCTGATCTCAGTAAACCATCCGCGCCGAGCCCTTCTCGATCAGCACCCGAGGTTAAGTCTGAGCCACAGGACGAAGAGTGCCACCGAGAATCCAGTTTTGAAGATACAGACCGCGTATCTCCTAAGCGAGAACTTGATGAAAACGACGCCACTCAAGATCAAGAACAAGATAGATATCCTTCGACATCGCCCTACGACGACTGCAGCATGGACTCGAAATATAGCAATGAAGAACAAATCGGCAGAGAGAGTCCTCATGTGAAGCCCGATCCAGATCAACCGGAAAATCTCTCAAGTAAGAATTCACCGATATCCGGGCCAATTTCAATAGCAACGGGACTGCGTACTTTTCCTTCGTATCCTCTATTCCCTCAGTCACCACCCAGTAGTATATCCTCTGGTAGTTTAACTCCTTTTCCGAACACTATTCAAAATGTCGTTGAGGTAGATCTGGCACGTGATCCCGTATTTTATAATTCACTTTTGCCTCGGCCAGGCAGCAATGATAACTCGTGGGAGAGTTTAATAGAAATAACTAAAACTCCTGAAACATCAAAGCTTCAACAGTTAGTCGATAATATAGACAATAAGGTCTCCGATCCCAACGAATGTATTGTATGCCACCGCGTTCTCTCTTGCAAGAGTGCTTTACAAATGCACTATCGTACGCACACGGGCGAGAGACCTTTTCGATGTAAATTGTGTGGCCGCTCTTTTACGACTAAAGGTAATTTGAAAACGCATATGGGCGTTCATCGCATTAAGCCGCCAGTTCAAATGTTACATCAATGTCCAGTTTGCCATAAGAAATTTTCGGATCCTACCATATTACACCAACACATAAGACTTCACACAGGCGAGCGCGCCTACGTCCCTTACGATCACATCAGAGGTATCGATATTGAGGGTTTTCCATCTCTAAGTAACGGGTCAGACGTCAGCGACTATCAAGCTCAGCGCCCCTTCCCGCGCCCGATGTTCCCCACTCCGACCACTCCCGGCGACCGACGGGCGGACTCCCGCGGGACCGACGATGAGAGCGGCCGGGACGAGCGCGAGCCCGCTATTCGGGAGTTCGACGACGACTTAGACATGAAGGATCGTCGAACTTCGCCGCTCTCCGTCTGCGCCTCGGCGTCCGAAAGCGAAATAAAAACTATCACCACAACGGCTTCCCTCCCATCGGCGACAGGTTCGGAGAGCGGGCGCAGCGCACGGGCCTCTCCACCATCGCCCACCATGTCGACGCTGTCGACGCCGCCGCGGCTGCCGCTGCACTCGCCGCTGCCGTCGCCGCCCACGCCTATCGCCGCGCTCGGGGCGCTCGGAGGATCGCCCTTCAGCCCGCTCGGACTTGCGTTTCCTCCCGCAGTGCGCGGCAACACGACCTGTAACCTCTGCTACAAGACGTTCGCCTGCAACTCCGCCCTGGAGATACATTACCGGAGCCACACCAAGGAGCGACCCTTTAAGTGCACCGTCTGCGATCGCGGATTCTCCACCAAGAGCAGTGGCGGCGGTTGCCGGTGCGGTAGGCGCGCGCGCGCACCCCGCCCCCCGCACGCCACTGCTTTGGACCTCTGGAACGCCTTCGTTTACCCGGGCAACATGAAGCAGCACATGCTGACGCACAAGATCCGTGACGTCCCGCCCGGCTTTGATAGGAGCTCAAGTGGGGCCGATGATGGCCGAGAGCCGAGCCCCGACCGTCGCTCGTCGCCTGACAAACTCGACCTGAAACGCTCGCCGCCTGCGCACCCGCCGCCGCCTATGTCGCACCCCCCACCTATTGATATGCCACCACTGCCTAAACGGCCCAGCGTGCCGAGCGGGCCGACCCACCCGCCGCCGCCGGCATCCTCCAAGCACCTGTGCGGGGTGTGCCGCAAGAACTTCTCCTCGTCCTCTGCGCTGCAGATCCACATGCGCACGCACACCGGGGACAAGCCCTTCCGGTGCGCCGTCTGCCAGAAGGCTTTCACTACCAAGGGTAACCTTAAGGTGCATATGGGCACCCATATGTGGAGTGGCGGCGCGTCTCGCCGTGGGCGGCGTATGTCGCTGGAGCTGCCGCCGCGGCCGCTGCACGAGCCGCACGACCTGCTGCGGCGCCCCGACCTCTTCTATCCGTACCTGCCCGCGCCTTTCCTCAACGGCATGCAGCAGAAGCTGAATGAGATATCAGTAATACAGCAGAGCGCGGGTCAGAATGGCGTAGCCGGGAAGTTCCCCGGTCTCCTTGGATTCGGAGCATTCGGAGGCGCTCGACCGGGTGCCGCCTCGCCCCTGGAGCGGCCGCCGTCACTAGAGGGCGGCGACGAGCGGCAGGCCGCCATGCGCGAGCTGGCCGAGCGCGGGCGCGAGCTGGCGGAGCGCAGCCGGCAGATGCGCGACGAGGGCGAGTACCGCGCGGCGGCGCACGCCGCGCACGCTGGCGGCGCGGCGGCGCAGGCCTCCCCGCCCGCGCCGCACCTGGCGCACCCGCTGGGCTCGCTGCCGCCGCCCGCGCGCACCGAGGGCCTCACGGTGTGA
Protein Sequence: MNASAPRRSAAAPGRAAPRRAATRPTAHFDGQFKNFTPALPNVNQHYAALTNSTLSAYLTPVSSITSFGDNTQASRGDGGRHLAGVSAAHRRLARRQRPRDHMSLMNMRRYDYENMPRPEYGIWRRGACEARANGRSLIYEPSAAPPPCHNRIPGARARCRPPPAARLALSPASDGEWCARSHAASAPYRVLRPSRVTGAASARGPAACHAPALSRVRSAAPCRASSPPASAASPSLDNVGVGISATDTRTFYKVRNAAAGGERRATHAAAPGELVPTAPLTNTNKQPPLILLLITSESSGSCSEEDINNACDETRDRPEAHMCPRCQEQFENLHEFLYHKRLCDEKALQMGEERMHSDPEEMVVSGDEEMDGPNKRLEQVRRHRQDAENNNSLEDGEAEVPEADVPPVGLPFPVAGHVTLEALQNTKVAVAQFAATTMANNADNEAALHELAVLQSTLFTLQHQQVFQLQLIRQLQNQLSLTRRKDDQLPSPPPSEPEPAQAAPAQSPSPPRPPREPTPVAPTPPTSQSLPSTHSHLTPKTEPITVPKLPTSSPPMMSHPPYSSISSSLASSIITNNDPPPSLNEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKSGKMSPYDGKSGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPVPEHLDKYHPPLLAQLSPGPIPGMPPHPLQFPPGAPAPFPPSLPLYRPPHHDLLPPRPLGDKPLPPHPLFTMREEQDAPADLSKPSAPSPSRSAPEVKSEPQDEECHRESSFEDTDRVSPKRELDENDATQDQEQDRYPSTSPYDDCSMDSKYSNEEQIGRESPHVKPDPDQPENLSSKNSPISGPISIATGLRTFPSYPLFPQSPPSSISSGSLTPFPNTIQNVVEVDLARDPVFYNSLLPRPGSNDNSWESLIEITKTPETSKLQQLVDNIDNKVSDPNECIVCHRVLSCKSALQMHYRTHTGERPFRCKLCGRSFTTKGNLKTHMGVHRIKPPVQMLHQCPVCHKKFSDPTILHQHIRLHTGERAYVPYDHIRGIDIEGFPSLSNGSDVSDYQAQRPFPRPMFPTPTTPGDRRADSRGTDDESGRDEREPAIREFDDDLDMKDRRTSPLSVCASASESEIKTITTTASLPSATGSESGRSARASPPSPTMSTLSTPPRLPLHSPLPSPPTPIAALGALGGSPFSPLGLAFPPAVRGNTTCNLCYKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKSSGGGCRCGRRARAPRPPHATALDLWNAFVYPGNMKQHMLTHKIRDVPPGFDRSSSGADDGREPSPDRRSSPDKLDLKRSPPAHPPPPMSHPPPIDMPPLPKRPSVPSGPTHPPPPASSKHLCGVCRKNFSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNLKVHMGTHMWSGGASRRGRRMSLELPPRPLHEPHDLLRRPDLFYPYLPAPFLNGMQQKLNEISVIQQSAGQNGVAGKFPGLLGFGAFGGARPGAASPLERPPSLEGGDERQAAMRELAERGRELAERSRQMRDEGEYRAAAHAAHAGGAAAQASPPAPHLAHPLGSLPPPARTEGLTV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00689616;
90% Identity: iTF_00707229;
80% Identity: -