Basic Information

Insect: Autographa pulchrina
Gene Symbol: -
Assembly: GCA_905475315.1
Location: FR997781.1:10691377-10702080[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00092 0.095 14.0 1.9 1 23 269 291 269 291 0.98

2 12 0.00031 0.032 15.4 4.3 2 23 299 320 298 320 0.96

3 12 0.74 76 4.8 0.3 1 23 324 346 324 346 0.93

4 12 1.2e-05 0.0012 19.9 1.8 1 23 351 374 351 374 0.97

5 12 0.00053 0.055 14.7 0.2 1 23 378 401 378 401 0.94

6 12 0.0036 0.37 12.1 0.1 2 20 418 436 417 442 0.92

7 12 0.00011 0.011 16.9 2.9 3 23 452 473 452 473 0.98

8 12 0.095 9.8 7.6 0.4 2 23 492 514 492 514 0.97

9 12 3.1e-06 0.00032 21.7 0.8 1 23 525 547 525 547 0.99

10 12 1.4e-06 0.00015 22.8 1.4 1 23 553 575 553 575 0.99

11 12 1.7e-05 0.0017 19.4 0.6 1 23 581 603 581 603 0.98

12 12 9.4e-06 0.00097 20.2 0.4 1 23 609 632 609 632 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00092	0.095	14.0	1.9	1	23	269	291	269	291	0.98
2	12	0.00031	0.032	15.4	4.3	2	23	299	320	298	320	0.96
3	12	0.74	76	4.8	0.3	1	23	324	346	324	346	0.93
4	12	1.2e-05	0.0012	19.9	1.8	1	23	351	374	351	374	0.97
5	12	0.00053	0.055	14.7	0.2	1	23	378	401	378	401	0.94
6	12	0.0036	0.37	12.1	0.1	2	20	418	436	417	442	0.92
7	12	0.00011	0.011	16.9	2.9	3	23	452	473	452	473	0.98
8	12	0.095	9.8	7.6	0.4	2	23	492	514	492	514	0.97
9	12	3.1e-06	0.00032	21.7	0.8	1	23	525	547	525	547	0.99
10	12	1.4e-06	0.00015	22.8	1.4	1	23	553	575	553	575	0.99
11	12	1.7e-05	0.0017	19.4	0.6	1	23	581	603	581	603	0.98
12	12	9.4e-06	0.00097	20.2	0.4	1	23	609	632	609	632	0.98

Sequence Information

Coding Sequence: ATGGATCTTGTAAAAGTTTGTCGTATATGTCTAAATATGAATGTGAAATTGCATAACTTGCAGGCTTTTCCATTAGACTCGTATTATGATTCAGTTATAGGAATCAATTTGCTGTACACAACCAGTTTGCCACCATATGCTTGCTTTGAGTGTGCTCAACTGTTAAGAAAGTTTTATAACTTCAAACAAAAAAGTTTTAAAAGCCAGGCTGCCCTTATTGGAATAATTAATAAATTTGGAGAGTTATCACCTTCAGAAATAGAACAATTAAAAAGGCAGAGTCTGCTAGAAATTGTTGGTAACCCAAACATTTCTATACAAGGAGAGAACCAATTACAATCTCACATTGAAATCAAAACAGAACACAATGTATTGGACAAAGGCCTTGATTGTATAGATTATGTGATAAAAGTGGAGAATGATGATTACTTATCACCGTGCCAAGTATCGAGTGATGATGATGAGCCGTTAGCACATCATAAAGAGAAGAAGGTGCAACAAGAGATACAGATTCAGAAGTTTGATATGAAAGAAGATTTGGAGGGGATTGATTTTATCGAATCTAACGAAGATCATTCACAATCTCTACCAGACATTGGTGAACATTTGGTTACAGTAAAGAAAACAAAAGGCCGGCACAAAAAGACGACGAGTTCGTCAAAACCCAAGAAAGCCACCAAAAGTATTAAGAACTTAAGTAATGACGAAATCAGAGACTTTATTACAGTTATTACTTTGTCGGAAGCAGAGCAGATAGAAGAGGTACAGAAACGTAAAACGACTTCCAATTACCTGAACTCTCCTTTCCAGTGTGAATTGTGCTTCAAAGGGTTCATTCACCCCGACGCTTGGAACCATCATGTTTCTAAACATTCGCCGAGTGCAGGCGACATAGAGTGCCATATCTGCAAGTTCAGGTTTAAGACGAAAAGGGCATTCAACAAGCATTTGTCCTCACACGAGAAGAAGTACTCTTGTAATTCCTGTCCGTACATATCTACGAATATGACTCAAGCAAAACAACACCTAGGCTGGCATAACGGAGTCACCTTTAACTGTAAACATTGCGGTGAAATATTTACTGTTTGGACATCATACATGAGTCATATGCGCATCAAGCACCCGTCGGAGTTCATATGCGGCATATGCGGGTACTCGTTCATCAGCAAGCTGGGGCTCACCATGCACAAGACAATGATGCATAAGGATGTTTTGGAAAAATCGTCGGAAGTGAAAGAAGAGGAAGGTCTTTACTGCGCGGAGTGTGACGTCAAGTTTATATCGGCGAAGGCTTACAAGCGACACATGGTCATGTCGGTCAAGCACACCAGCAGTATGGACTCTGTTAAAGGCTGTAGAAATTGTGGTGAAACCTTCAAAACATCAGAGGAACTAAGACTCCACCATCGTAAGGAGCACACGAGAACAAGGCCCAAGAACTATGGAAAGAAACAGTCCAACGCGTGGCCAGCTAAGTGTGAACATTGCGAGGAAGAGATCTCAGACGCTCGTGCGTACTGGTCGCACTTCCGCCGAGCGCACCCGGACCAGCACTACCCCGTGCAGAAGGACTACGTCTGCGACGTCTGCGGGAAAAGCTTCCGGGGCAACGCATTCCTAACATACCACAAGCGCACGCACAGCTCGGAGCGCGCGTACAAGTGCGCGACGTGCGGGAAGGCCTTCTTCAACCGCACCAACCTGCAGATGCACGTCAAGACGCATTCCGACGACCGGCCTTACCCCTGCTCCGTCTGCTTCAAGGCTTTTAAGGGCAAGGGGGCGCTTAATAGGCATTTTAGGAGCCACACCGGCCAGAAGCCATACGAGTGCGAGGTGTGCGGCAAGGGGTTCTCGCAGTCCAACAGCCGCAAGCTGCACGTGCGCACCGTGCACCTCAAGCAACCCTCGCCCTACCTCAGCCGCGCGCGCAGCGAGAGACGCGGCAAGCCGCCGCCGAAGGACGAGGCCGACCACTTCATGTATTAA
Protein Sequence: MDLVKVCRICLNMNVKLHNLQAFPLDSYYDSVIGINLLYTTSLPPYACFECAQLLRKFYNFKQKSFKSQAALIGIINKFGELSPSEIEQLKRQSLLEIVGNPNISIQGENQLQSHIEIKTEHNVLDKGLDCIDYVIKVENDDYLSPCQVSSDDDEPLAHHKEKKVQQEIQIQKFDMKEDLEGIDFIESNEDHSQSLPDIGEHLVTVKKTKGRHKKTTSSSKPKKATKSIKNLSNDEIRDFITVITLSEAEQIEEVQKRKTTSNYLNSPFQCELCFKGFIHPDAWNHHVSKHSPSAGDIECHICKFRFKTKRAFNKHLSSHEKKYSCNSCPYISTNMTQAKQHLGWHNGVTFNCKHCGEIFTVWTSYMSHMRIKHPSEFICGICGYSFISKLGLTMHKTMMHKDVLEKSSEVKEEEGLYCAECDVKFISAKAYKRHMVMSVKHTSSMDSVKGCRNCGETFKTSEELRLHHRKEHTRTRPKNYGKKQSNAWPAKCEHCEEEISDARAYWSHFRRAHPDQHYPVQKDYVCDVCGKSFRGNAFLTYHKRTHSSERAYKCATCGKAFFNRTNLQMHVKTHSDDRPYPCSVCFKAFKGKGALNRHFRSHTGQKPYECEVCGKGFSQSNSRKLHVRTVHLKQPSPYLSRARSERRGKPPPKDEADHFMY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00185525;
90% Identity: iTF_00185525;
80% Identity: -