Apul009293.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- -
- Assembly
- GCA_905475315.1
- Location
- FR997789.1:615060-617786[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1 1.1e+02 4.4 0.9 5 21 214 230 211 231 0.92 2 13 0.00065 0.067 14.4 6.0 2 23 254 275 253 276 0.95 3 13 0.052 5.3 8.4 2.8 1 20 290 309 290 311 0.95 4 13 4.1e-05 0.0042 18.2 2.2 1 23 320 342 320 342 0.99 5 13 2.3e-05 0.0023 19.0 2.0 1 23 350 373 350 373 0.97 6 13 8.9e-05 0.0092 17.2 0.1 2 23 380 401 379 401 0.95 7 13 0.0008 0.082 14.2 5.1 1 23 407 429 407 429 0.98 8 13 2.8e-07 2.9e-05 25.0 1.2 1 23 435 457 435 457 0.96 9 13 1.3e-05 0.0013 19.8 1.0 1 23 463 485 463 485 0.98 10 13 9.1e-07 9.4e-05 23.4 0.2 1 23 491 513 491 513 0.98 11 13 0.00021 0.022 16.0 0.3 1 23 519 541 519 541 0.96 12 13 3.6e-05 0.0037 18.4 2.2 1 21 547 567 547 569 0.96 13 13 1.1e-05 0.0012 20.0 1.1 1 23 575 597 575 597 0.98
Sequence Information
- Coding Sequence
- ATGGAAATTAGTGTTAAATCATTTAAAAAGATATGCCGCATATGTTTAGTAGAATGTGCCGACATGAGATCATTGTTTACGAAGACAGAAGGCGAAGAGCGATACCTATTTGAAATACTCGAGTTAACTGCTAATATTAATATACAAATTGAGGATAATTTACCGAAACAAGTTTGTTGTGAATGCCAAGATGTAATGTGCAAGGCGGACGCGTTTAAGCGCCGCTGTCACGAGTCTGAGAAGATTCTAAGCAACCTCTGTGAGTTAGAAGTGAGTAAAGACGAAACACTAAGTATTATTGATAATGAGTGCAGTATTAAACATGAACAAAGTGATTTGAACCAGCAATTAAGCAACCACGATAGTTTCCCGCCAAATTATAGCACAGAAGAGAGTTTTGATGTGAAAAATGGTGATTTATTAAATGTTTTAGCAGTGTATCCTTCGAATGACACTAGTTCCTCTAATACCGAGGGAAATGTATCGGAAAACTGCGCAGTACACGTTAAAGTAGAAGAAGTTAATAATTACGAAGAGGATACAGACTTTTCTAGCCATTATAATGATGCTGAACCCACAGAAACAAATATCTTGGTAGAAGTAAATACAGCCAAACAGCTAAAAACAGTCTTTCAATGCAAATGTGGCTTAAAATTTAACACTATAGATAAATATAAAACTCATACAAAACTAGGAAATTGTAATCAAAAGAAAGTTAAACAGAAATTAAGTAAAAAGGTTTCAGCAAAGAGTCCATTGCAGTGTACTGAATGTAAGCAAGAGTGTAAAAGTCTATCATCTTTGAAAACCCATCAACAGACCCATCATAATGAAAATGAAAATAAATCCCAAAGACTTGAAGTCTTTTATCAATGCTTATTCTGTTTATGTACATTTAAAACTAAAGAATTACTGGCCGCTCACAAACATGAGAAAACAGATGACAAAACCGAATTATTCCAATGTTCATTATGTTTACGTAGATTTAAAAACAAGACTACACTCTCTGCCCACATACAGAGGCACAAAGAAACAGACAATATAAAACACGTTTGCAAAGTTTGTAAAAGAGAGTTTAAATACAAAGCGTATTTAGAAAATCATATATTGACGATGCACTCGAAAAATAACAGCTTATCTTGTGAGATATGCGGTCAGAGCTTTACGGATGAACAAATGTTGGAAGAGCATAAGGAGAGTCATGTTAATAAGAAGAAGCATCAATGTTCCGTCTGTAGCAAGTTGTTTGTAATGTCCTGTACGCTGAAGGAGCACATGCGGACGCATACTGGAGAGAAACCGTTCCTATGCTCACAGTGTGGTCGAGGGTTCAGTCAGAAAACTAATCTAGCACAGCATATGAGGCGGCATCAGGGCTTGAAGCCGTTTAAATGTGAAAAGTGTGAGAAGAGATTCGTATCAAAAGGCGAGTTGGACGCCCACAGCCGCAAGCACAGCGGCGCGCACCCGTTCGTGTGCGACGACTGCGGTAACGGCTTCACCACATCCAGCGCACTCGTCAAACACAGACGCATACACACCGGAGAGAAACCTTACCTATGCGACCTCTGTCCCATGAGGTTTGCAGCTTCAGGAACGCTGAAGAACCACAGACGAACTCACACTGGTGAAAGGCCATTCCAATGCTCGTATTGCGAGAAAGCGTTCGTCCAGCGCAATGATTTGATCTCTCATATAAGGTGTCATACCGGTGAAAAGCCGTACACTTGTGCTCAGTGCGGACATTCGTTTAGGAAGGCAGCGGCGCTGAAGACTCATGTTAAGATGCATGCGAAGGAGGCAGTGGGTTTGATGCAAGGGGCCATGTTGAATGGAATGCAGTGTGCGGAGCAGTGA
- Protein Sequence
- MEISVKSFKKICRICLVECADMRSLFTKTEGEERYLFEILELTANINIQIEDNLPKQVCCECQDVMCKADAFKRRCHESEKILSNLCELEVSKDETLSIIDNECSIKHEQSDLNQQLSNHDSFPPNYSTEESFDVKNGDLLNVLAVYPSNDTSSSNTEGNVSENCAVHVKVEEVNNYEEDTDFSSHYNDAEPTETNILVEVNTAKQLKTVFQCKCGLKFNTIDKYKTHTKLGNCNQKKVKQKLSKKVSAKSPLQCTECKQECKSLSSLKTHQQTHHNENENKSQRLEVFYQCLFCLCTFKTKELLAAHKHEKTDDKTELFQCSLCLRRFKNKTTLSAHIQRHKETDNIKHVCKVCKREFKYKAYLENHILTMHSKNNSLSCEICGQSFTDEQMLEEHKESHVNKKKHQCSVCSKLFVMSCTLKEHMRTHTGEKPFLCSQCGRGFSQKTNLAQHMRRHQGLKPFKCEKCEKRFVSKGELDAHSRKHSGAHPFVCDDCGNGFTTSSALVKHRRIHTGEKPYLCDLCPMRFAASGTLKNHRRTHTGERPFQCSYCEKAFVQRNDLISHIRCHTGEKPYTCAQCGHSFRKAAALKTHVKMHAKEAVGLMQGAMLNGMQCAEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00185510; iTF_01221825;
- 90% Identity
- iTF_00185510;
- 80% Identity
- -