Apul016564.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- -
- Assembly
- GCA_905475315.1
- Location
- FR997761.1:11529201-11531636[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-07 0.00016 22.1 0.0 2 41 25 65 24 67 0.91
Sequence Information
- Coding Sequence
- ATGCCCCCAAAACGTAGCGTCAAACAAAGAAATAGAAGACGTCTGGGAGCGCGAACTTACAAAAATTACTCTGAAGAAATGCTGTTGTTGGCTGTTGAATTGGTAAGAAACAAAAATACAACTTCTTATGAAGCTGAGAAGCAATTTGGCATACCCCGACGGACAATTGAAAAAAGAGTGAAAAACTTGCATACCGATAAACCTGGCCCGCGTTTCCGTCTATCTACAGAAGAAGAAGAAAAAATTGTCAAAATACTCATAGCAGCAGGTGATTTTGGATGTCCATTATCACAGTTGGACTTAAAACTGGCGGTTTATGACTACCTTAAAAAAAATAACAAGACTTACATATTTAATGACCAAGTTCCCGGTGATTGGTGGGTAAAACATTTTTTAGAGCGGCACCGAGACCAACTTACACTCAGGTCTACACAAAATATTACTAAAGCGCGAGCAGAAAGAACGTTGGATGAATTCAAAGCTTATTTTGAAAATCTGGAGATTTCTCTTCAGAATGTGCCACCTAAAAATGTTATGAATTACGACGAAACCAACGTTTCTGATGACCCAGGCTCCACAAAATGTATTTTTCGCCGAGGAGTAAAATACCCTGAAAGAATCATGAACCATTCAAAAGGCTGCATATCTGTAATGTTTGCGGGAACTGCTGACGGTGAACTTCTGCCGCCATACGTTGTGTATAAATCCGAAAATTTATGGACTGAGTGGTGTAAAGATGGGCCAGAGGGGGCACGCTACAATCGCTCGAAAAGCGGTTGGTTTGACTCCGTTGTATTTTTGGACTGGTTCACAAATATCGTTATTCCATGGGCTAGACAATTAGAAGGGCCGAAAATAGTAATAGGGGACAACTTATCCAGCCATTTAAATCCCGATGTGGTAGAATTGTGTGAGGCTCACCAAATACGTTTCATATTTTTACCTCCTAGATCTACTCACTTAACGCAGCCGCTCGACGTTGCTTTCTTCGGGCCTCTGAAAAAGGAATGGAGGAAAATCCTTCTTCGGTATAAGACGGAAAATCCTAAACAGGCATCGTTAAACAAAACCCATTTTCCTCTTCTACTGAAGCAATTGATGGATGCTGCTAACATAAAAAAACAAAACTTGCTGAGCGGTTTTAAAGCTACTGGCATACACCCGTTTAATCCCTATGAGGTTTATAAAAAACTGCCCGAATATGAAGATGAAATTAGATATGACGTTGATCAAACACTGCTTGAATATCTTAAAGAAAATAAACATCCTAATCCAATTAAACGAGGAAAAAACACTAAGTTAAATGTTCCCTCGGGTAAATCAGTCTGCAGCGCCGATATCTTGTCATGTTTGTCGACAAATAAAAAATCTACCACGAAACCAAAAACCACTATCAAAAGGAAAACGACTGGCCAAACAGAAGAACATATCTCTAAATTGGAAGAAAGAGAAGAAGTACAGAGTCCATCAGAAAACTTAAGTAAGGATGTAAAAAAAAGGAAATCAATTAAAAGAAAAAAACGTCGTGTTGAGAGTTCTTCAGATTCAGAATCCAGTTGTACAATACCTTCTAGCGATTCATCAGAATATGACCCCAGAAATGATGAAAACACAGAAACAGAAAATGACATAAATGAAAGCATAATGGTTGGTATTGATTATGAGGAGAGTATTGAAGGTCAGCACGTTAATAGAAGCAATGAAGAAACTGCAGGTAGCATAATACGAGACGAAGATAGAAAAGTCCAGAACGTAAAAGAAAAGAAAGATGAAGTTCCAGAAAGTCAGGAAACAAAGGTAGTTATGGGTGGTTTAGATAACAGTAAATTGAGTTCAGGAAACCAAAATATAGTGACAGTTTTATCGGACATAAGAAATACAGCAGAAAATCAGGTATATTTCGATTTGCGCAAATATGGTCCTCTTGCACTTGAAGAAATAAAACCTGATCATATTGTGAATGTAAAGTATAGAACAGAAAGTAAAAATATACAAAGCTCCAAAATAGTTAAAAAAACAATTAAATCTGAGCATGCAGGCTTGATTGAAACTGAAACAACTAGGATGAATAAACCACCGTCTCCTAATATGGCTTCTGACACGAATTGGGGTGCAAGTTGTAGTACGGAACCCAAGCAAAATACTTCTTTGATTGATTACAAAGTCAATGATTTCGTATTAGTAAGATATTTATTAAAAAAGAAAATTCAGTATTTTGTAGGTAAAATAATTGTAAAACTAACGGGTAAATATCAGGTTTCATTTTTTAAGAAATCTGGAAGAAATGATAATATAAAATTTACTCTACCAAAGAAAGAAGACATTGATACCATTGATGAAGGAATGATTGTGAAAGAAGTTCAGCTGATACCTCTAAGTGAAAGAGAGACTGAATTTGTATTTTTAGAAGATGATGACTTAGTGTATTTTGATTAG
- Protein Sequence
- MPPKRSVKQRNRRRLGARTYKNYSEEMLLLAVELVRNKNTTSYEAEKQFGIPRRTIEKRVKNLHTDKPGPRFRLSTEEEEKIVKILIAAGDFGCPLSQLDLKLAVYDYLKKNNKTYIFNDQVPGDWWVKHFLERHRDQLTLRSTQNITKARAERTLDEFKAYFENLEISLQNVPPKNVMNYDETNVSDDPGSTKCIFRRGVKYPERIMNHSKGCISVMFAGTADGELLPPYVVYKSENLWTEWCKDGPEGARYNRSKSGWFDSVVFLDWFTNIVIPWARQLEGPKIVIGDNLSSHLNPDVVELCEAHQIRFIFLPPRSTHLTQPLDVAFFGPLKKEWRKILLRYKTENPKQASLNKTHFPLLLKQLMDAANIKKQNLLSGFKATGIHPFNPYEVYKKLPEYEDEIRYDVDQTLLEYLKENKHPNPIKRGKNTKLNVPSGKSVCSADILSCLSTNKKSTTKPKTTIKRKTTGQTEEHISKLEEREEVQSPSENLSKDVKKRKSIKRKKRRVESSSDSESSCTIPSSDSSEYDPRNDENTETENDINESIMVGIDYEESIEGQHVNRSNEETAGSIIRDEDRKVQNVKEKKDEVPESQETKVVMGGLDNSKLSSGNQNIVTVLSDIRNTAENQVYFDLRKYGPLALEEIKPDHIVNVKYRTESKNIQSSKIVKKTIKSEHAGLIETETTRMNKPPSPNMASDTNWGASCSTEPKQNTSLIDYKVNDFVLVRYLLKKKIQYFVGKIIVKLTGKYQVSFFKKSGRNDNIKFTLPKKEDIDTIDEGMIVKEVQLIPLSERETEFVFLEDDDLVYFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01491885; iTF_01491883; iTF_01361559;
- 90% Identity
- -
- 80% Identity
- -