Apul019972.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- -
- Assembly
- GCA_905475315.1
- Location
- FR997771.1:10723196-10725121[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.4e-08 1.9e-05 25.1 0.0 2 38 10 45 9 49 0.95
Sequence Information
- Coding Sequence
- ATGCCAAATAAAAGAAAAAAATACTCTCACGAAAATCTATTGAAAGCCTTAGATGCAGTAGAAAAGGGTATGTCCAAAAAACTGGCCTCGAAAACCTTCAATGTACCTAGAGGAACTATCCAGTCGCGATTAAGAAAGCCGTGCAAGAAGCTCCCAGGCCCTGATCCAATATTGTCGAACGAAGAAGAGGAAGTTTTAGTGAAGTGGGTTTTAGATTGCTGTCGGAAAGGATTCCCAAAAAAAAAAACTGATTTACAATTAAGTGTAGCACATTTCTTAAAGAAGACAGGTAGAGATAAACCCTTTCAAGATGACATACCTGGTAGAAAATGGTATGACCTTTTTATGCGCCGTCATCCAAAACTCAGCGAACGCACTGCCGAAGCTGTAACATCAGCCAGTGCTAATGTATCAGAAGAAGATATCAAATGGTGGTTCCAAAAAATTGAGTTTTATCTTAAGGAAAACAACTATTTTGACATCTTACAGAACCCGTCTCGTGTTTTTAATGGGGACGAATCGAATTTTCAGTTATGTCCCAAGAGTGGCAAAGTTATTTCATTACGAGGAGAAAGAGACGTGTATGAAGTTGATCGTGCTGCAGTCAAAACATCCCTTACTGTACTGTTTACGTTTTGCGCCGATGGAGATATTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACACATCTTAGTCTTGAAGTGAGTGAATTGTGCAGCAAGTTGGAGATTATTTTGATTGCTCTATACCCCAACGCAACACGGATACTACAGCCAGCCGACGTGTCAGCCTTCAGACCTCTAAAAAATGCATGGAAGGAAAGTGTCCTGAAATGGAGGAGAGATCACCCTTTGGAGACTCTCACAAAGAATCATTTTGTACCTGTTCTTAAGGAGGCTCTAGAGGTTGGCGTCAAAGATACAGCAGTTATAAATGGATTCAGGACAACTGGCTTATTTTCCTGGAACTCTGAAGCCATCAACTACAAAAAATGTCTGGGTAAAGGAAGTAAATATGATGAAGAACCAAAAGAAGACAAATCAAAATTACAAGAAGATTCTAATAAAGATAGAGTTATGACACGTGCAACTTTAGAAAAGATTGTAGGGCAGGAAAAAATTACATTTCTGCAAAGAACGTCGCTTGAAAGCCTAACAGAAACAGAAAGGATTTTAAAGAAGATTTGTTGTTATTTTGATGATCAAACTGATGCGTCTACAATGTCCACATTCCAAGAAGCTGTTATCGAGTATCTCAATGTTGACCAATTTCCAGTAATATTTGCAGAAGATTTTGTAAATGATATGCAAGCTATGAACACTGCAACAACAACTGAACCATCTGCTAAAAATACTGAAGATTGTCTTGAGAGTGCGCAATTCTTATGTCTTGATAGTCAACAATATTTACTAACTCCAGTTAAAATACAGGACGTATTGGTTACGGAAAAAACGCCTGAACGAAAAAGTGTTAAAAATGTAAAGAGATCATCATTCGTTCTTACTTCAGCTGAATGGCAGAAGACTGAAAACGACAAATTAAAAGCTAAACAACTTAAAGAAGAAGAACAAGCGACTCGTAAAAAGAACAGATTACTGAAACAAGAAGAAAAAAATAACGCGAAAGTAGAAACCAATAGAAATAAGATAAACAAAAAAGCGAAAGAGACAATAGCTACTAAAAAACAAGAGACAAAAGCTAATCAAATACAGGAGAAAAATGAAAAAAAAAATAAAAGAGATGAATCCTAA
- Protein Sequence
- MPNKRKKYSHENLLKALDAVEKGMSKKLASKTFNVPRGTIQSRLRKPCKKLPGPDPILSNEEEEVLVKWVLDCCRKGFPKKKTDLQLSVAHFLKKTGRDKPFQDDIPGRKWYDLFMRRHPKLSERTAEAVTSASANVSEEDIKWWFQKIEFYLKENNYFDILQNPSRVFNGDESNFQLCPKSGKVISLRGERDVYEVDRAAVKTSLTVLFTFCADGDITXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTHLSLEVSELCSKLEIILIALYPNATRILQPADVSAFRPLKNAWKESVLKWRRDHPLETLTKNHFVPVLKEALEVGVKDTAVINGFRTTGLFSWNSEAINYKKCLGKGSKYDEEPKEDKSKLQEDSNKDRVMTRATLEKIVGQEKITFLQRTSLESLTETERILKKICCYFDDQTDASTMSTFQEAVIEYLNVDQFPVIFAEDFVNDMQAMNTATTTEPSAKNTEDCLESAQFLCLDSQQYLLTPVKIQDVLVTEKTPERKSVKNVKRSSFVLTSAEWQKTENDKLKAKQLKEEEQATRKKNRLLKQEEKNNAKVETNRNKINKKAKETIATKKQETKANQIQEKNEKKNKRDES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00186115; iTF_01166626; iTF_01166625; iTF_00637573; iTF_00636327; iTF_00937223; iTF_01385675; iTF_01430742; iTF_01161278;
- 90% Identity
- iTF_00186115;
- 80% Identity
- -