Apul020545.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Autographa pulchrina
Gene Symbol
-
Assembly
GCA_905475315.1
Location
FR997770.1:5228162-5230702[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.9e-08 8e-06 26.2 0.0 1 37 10 45 10 51 0.91

Sequence Information

Coding Sequence
ATGTCCAAGAGACCTATCCACCAATATAAAGAAGAACAATTGACAGAGGCTATGGCGGCGATTAGACAAGGGATGAAGATTAGAGAAGCTAGTCGAGTTTTTATGGTTCCGCGAGGGACGTTACAGGATCGACTACATTTAAGGGTTCCAGATTTACCCCGTAAAATGGGGCCAGATTCAGTGCTCACTAAAACTGAAGAAACCACATTGAAAGACTGGTGTATAGCATTAGCGAAATGTGGCTTCCCTTTAAAACGTGATGATCTCCTCAATACCGTTCATAATATTATATCTGATGATAAAAGACCAAACCCATTTGTAAATAATCGACCAGGGAAGAAATGGTACCAATCATTTCTTAGAAGAAATCCCGAGTTAAGTGAGAGGACACCTGAAAATATATCTAAGGGTCGAGCCGCTATTACTGAAGAAGGTATTCGGAAGTGGTTTGCCGAACTTGTGAGGCATTTAGAAGACATAAAGGCAACTGATATTTTGACCAATCCTGACCGAATATTTAACGGTGATGAAACTAGTTTTTATATATGCCCCAAAACTGGAAAAGTGATTGCACCAAGAGGATACAAAAATGTCTACCAAATTGTAAAAGGAAAGGAAAAAGAAGCTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGCCACTTAACAATGCGTCTCAGCGAATATTGCCACGAAAACGGTATTATCCTTTATGCACTTCCACCAAATGCAACACATTTGATTCAGCCGGCTGATGTTAGTGTGTTTAAACCTTTCAAGGCAGAATGGAAAAATACCGTGTACGAATGGGCAACTCAACCTGAAAATGTCAATAGTGTTTTGACCAAGGCAACATTTTGTCCATTACTTAAAAAGGTCTTAGATAAAGAAAATTTGTCTAGAACAATCATCAACGGTTTTCGCAAATGTGGATTATACCCATACGATCCAAACGCTTTGGACTACTCAAAATGTGTGCAGAATAATCTTGAGAAACATCATAACACTACCAAGAATTCGAAATCTCCAGGTACCAAAATTAAGAACAGGCATTTGAATACCGCCATCAAGTGTATTAATCATCTAGATAATGAGCTAAAAAACGCTGGAGTAGACACAGCAACTGTAATCAATGTTTTGAGTGCGGCAATTAATATGACACGACCAGAAAGTTTAAATACAACAAAAAATTCAACTACGGATTCCACAATTAATAACATTTCTGCTTGTGGTATTGATGAAACCCAATCATTTAATCCTGGTGCTATTTTAGCATCAGGATCAAATGAAATTATTGACATAAGTTTGCCAATTATAGGTGATTTCACATTGGAAAATAATTTAAATACCTTTACAGAAGAAGAGTTATTCTCGAACAAATTTGAAATCATAACCGACGTTGCAGTGATTCACCAAAGTAGTGAAATTCAAGACCAGACACCAATGTTTGTTGCAAGTAATCAAGACGGCGACTGTGTTAAAGAATGTCCAACTAATCAAACACCAAAATCAATTTCTGAAAACTATATCGAAAAGAAAGACATCAAACTAGGAATAAGTACTAATCATGGTATAATTGATAAAGAAAATGAAAGTGTTGAACAAGAAATACATACTTACTATGACATGGAAAATACTGGAGAAGCATTGCTCCCAGAAAATAATAATTATGTAATGGATAGTGTGAAAGACATTAAATCAAATAAAACTGAACAAGAAGTGACAATAAATATGGAGTCTGTACTGCATGAGAGTAACAAAAATAAAGAAAACAAAATAAAAATATTGTCTGATGTGATTGTAAAAGCGGGAGATGTGTCGCCCATTTTAAATAAGTATTTAACCTTACCTGCTGTAACTAGATCAAAAAATAAGAGAGAATCAATCAATAGAATAGGAGCTATTTCTTCCAAAGAGTGGAGACAGTTTGAAAGAGAAAAAGAAGAAATGAAGGAACAGAAAAAGAACGAAATAATAAGTAAGAAACTAAAAAGACTTGAAATTAAGGCAAAGAAAGAAGATGAGAAACAAAAAAAGAAAGAAGAGAAACAAAAAAGGAAAGCGGAAATGCTGTTGAATTCTAATAAAAGTAAAAAGAAAAAGACCAATAGAACATGTACTATAAACAGGATAAGATGTAATAGTTGTGAAGAGGAAATGACTAGCGATACCGAAATAAACGACCTGAAAAATATTGGATGTGATAATTGCCCTGCATGGTACCATTTAAAATGCACTGATTTCGCTGGTGATATGTTTGAAAACATATGTGGTAAGAAATTTCTATGCCAAATATGCAAAGTTAGTGAGGGGCTGACTTTAGGGTAA
Protein Sequence
MSKRPIHQYKEEQLTEAMAAIRQGMKIREASRVFMVPRGTLQDRLHLRVPDLPRKMGPDSVLTKTEETTLKDWCIALAKCGFPLKRDDLLNTVHNIISDDKRPNPFVNNRPGKKWYQSFLRRNPELSERTPENISKGRAAITEEGIRKWFAELVRHLEDIKATDILTNPDRIFNGDETSFYICPKTGKVIAPRGYKNVYQIVKGKEKEAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSHLTMRLSEYCHENGIILYALPPNATHLIQPADVSVFKPFKAEWKNTVYEWATQPENVNSVLTKATFCPLLKKVLDKENLSRTIINGFRKCGLYPYDPNALDYSKCVQNNLEKHHNTTKNSKSPGTKIKNRHLNTAIKCINHLDNELKNAGVDTATVINVLSAAINMTRPESLNTTKNSTTDSTINNISACGIDETQSFNPGAILASGSNEIIDISLPIIGDFTLENNLNTFTEEELFSNKFEIITDVAVIHQSSEIQDQTPMFVASNQDGDCVKECPTNQTPKSISENYIEKKDIKLGISTNHGIIDKENESVEQEIHTYYDMENTGEALLPENNNYVMDSVKDIKSNKTEQEVTINMESVLHESNKNKENKIKILSDVIVKAGDVSPILNKYLTLPAVTRSKNKRESINRIGAISSKEWRQFEREKEEMKEQKKNEIISKKLKRLEIKAKKEDEKQKKKEEKQKRKAEMLLNSNKSKKKKTNRTCTINRIRCNSCEEEMTSDTEINDLKNIGCDNCPAWYHLKCTDFAGDMFENICGKKFLCQICKVSEGLTLG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00120443;
90% Identity
-
80% Identity
-