Apul004630.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- lolal
- Assembly
- GCA_905475315.1
- Location
- FR997762.1:6600807-6610662[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-15 8.1e-13 48.6 0.0 3 42 328 368 327 371 0.95
Sequence Information
- Coding Sequence
- ATGACAGCGTGCTACTGGGGAGTTTGTTGCGCCGTTTCTTCTCCTCAGCCAGAGCACTTAGGAAGCGGTGAAGGGTGGGCGATTTGGGGTCGGTTCATATCTGGCGGTGGTGGCGTCGCGTGTTGTCGGTCGCGTGGCGCTGGGGCGGGCGGGCGCATGGTGGAGCATTCAGCCTTTCACACTGACCTGATGACGCATTGGTGCGTCAGGTGTGAGAGGTTGGATGTTTTGTTGTGTAGCCTCTTCGTAGAGAATCCATCTCCACACCCGATTGTGATATTGAAGGATGTGACATTCACAGATTTGCGTACAATGGTAGATTTCATGTACTGCGGCGTTGTGAATGTCACTGAAGAACAACTACCAAAGGTCCTCGACACAGCTAAACTCTTAAAAATAAAAGGACTAACCGAAATGCCGGAGTCGACTTCGTTGACTCGCTCGCAAAGTGACCGGAACGGCGGCACGGAGCAGGCGGAGTCCATGGACACCCAAGAAAACGCAGTCGAGCCGGGAATCAGGAAGAAAAGGCGCAGGAAGAGTTCGCCCGCGGTCGTCGCGGAGGCCGCGGCAGAGGCGATGGCGTCGGGCAGTCCACAGCCGATGGAGCAAATAACCTTCTGTAGCGTACCGCAGCGTCGCTACAACGAAATCCGGACAATAGACAACACCCAGACACAGGAGGCAGCGGAGTCGACGGACCATTCCGTGGAATTAATCGAGCCCTCACCAGATTCGCAAGGCATATGGACAAGCGACGGATACAATCAGCGGTATAACGCGTGTATCGGCGCAGGGATGGTGGCGAGCGACGCCGGCATGCCCTACATGGTGGGCTTGCCGCCGGACGGAGCGTACGCGTCGGCGCCGGCCGAGTGCCTGGCCGGCCCCTCCACCGCGCCTGCGCACAAGTCGCCCTCGCCCAAGCGCGCCACCAAGCTGATCAACCGCCGCAAGCGCTCCACCAACCCCCGCGCCTCCGAGAACTTCCAGCGCGCCCTGGAGGCCGTGCGGTACGGCGGCATCGGCTTCTGCAAAGCGGCCAAAATATTCGGCGTCAACAACAGGACCCTATGGTTGGAGTATAAGAAGAAAGGGTATCCCAATACCAGGCCGAGTATAAGGAGTCGGGTCAAAAAAGAAAACAAGTCGTCACCCATTTTCAAGAGCGAGGAGTCGCAGCAGATGTCGCAGCAGCAGATTATGCTGTGCCCGCAGCAGCAGATGCCGCAGGGCTACGTGGAAGCCGGCCAGCACGCCTTCCTGCAGGGGGTCCCGCCCAACTCCATCAGCCTTCTGGGTACCTCGATAACCTTTAATAACATGCAATAG
- Protein Sequence
- MTACYWGVCCAVSSPQPEHLGSGEGWAIWGRFISGGGGVACCRSRGAGAGGRMVEHSAFHTDLMTHWCVRCERLDVLLCSLFVENPSPHPIVILKDVTFTDLRTMVDFMYCGVVNVTEEQLPKVLDTAKLLKIKGLTEMPESTSLTRSQSDRNGGTEQAESMDTQENAVEPGIRKKRRRKSSPAVVAEAAAEAMASGSPQPMEQITFCSVPQRRYNEIRTIDNTQTQEAAESTDHSVELIEPSPDSQGIWTSDGYNQRYNACIGAGMVASDAGMPYMVGLPPDGAYASAPAECLAGPSTAPAHKSPSPKRATKLINRRKRSTNPRASENFQRALEAVRYGGIGFCKAAKIFGVNNRTLWLEYKKKGYPNTRPSIRSRVKKENKSSPIFKSEESQQMSQQQIMLCPQQQMPQGYVEAGQHAFLQGVPPNSISLLGTSITFNNMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00185235;
- 90% Identity
- iTF_00186449;
- 80% Identity
- iTF_00186449;