Agaa023713.1
Basic Information
- Insect
- Autographa gamma
- Gene Symbol
- lolal
- Assembly
- GCA_905146925.1
- Location
- LR989849.1:3410529-3422619[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.7e-16 8.3e-13 48.4 0.0 3 42 308 348 306 351 0.94
Sequence Information
- Coding Sequence
- ATGTCTCAACAACAGTACAGTCTGAGATGGAACAACCACCAGCCGAACTTTATTAGCATGTTCACAAGCTTGCTGAACACGCAGACACTTGTGGATGTGACGTTGTCTGCTGAGGGGAAACAGTTGCTTGCCCACAAAGTTGTGTTGTCGGCTTGCAGCACATATTTCCAGAGCCTCTTCGTAGACAATCCATCTCCACACCCGATAGTGATACTGAAGGACGTGACGTTCACAGATCTGCGCACCATGGTAGACTTCATGTACTGCGGCGTTGTCAATGTCACGGAAGAACAACTCCCAAAGGTCCTCGACACAGCTAAGCTCTTAAAAATAAAAGGACTAACGGAAATGCCGGAGTCGACGTCGTTGACTCGCTCGCAAAGTGACCGGAACGGCGGCATGGAGCAAGCGGACTCCATGGACTCGCAAGACACCACCGTCGAGCCGGGGATCAAGAAGAAAAGGCGCCGGAAGAGTTCCCCCGCAGTCGTCGCGGAGCCAACGGCAGAGGCGATGGCGTCGGCCAGTCCGCAGCCCATGGAACAAATAACATTCTGTAGCGTTCCGCAGCGGCGCTACAACGAGATCAGGACAATCGACAACACGCCCCAGACACAGGAGGTAGCGGAGGCGGCGGACCAATCCGTGGAAATTATCGAGCCCGCACCAGCTTCGCAAGTCCAAGGCATATGGACAAGCGACGGATACAATCAGCGGTATAACGCGTGTATCGGCGCAGGCATGGTGGCGGGCGAGGGGGGCATGCCGTACATGGTGGGCTTGCCGGCGGAGGGCGCGTACGCGGCGCCCGCCGAGTGCCTGGCCGGGCCGTCCGCGCCCGCGCCCTCGCCCTCGCCCAAGCTGCCGCGCGCCAGCAAGCTGCTCGCCCGCCGCAAGCGCGCCACCAACCCGCGCTCCTCCGAGAACTTCCAGCGCGCGCTCGAGGCCGTGCGCTTCGGCGGCATCGGCTTCTGCAAGGCCGCCAAGATATTCGGCGTCAACAACCGGACCCTGTGGCTGGAGTACAAGAAGAAAGGCTATCCCAATACCAGGCCGAGCATAAGAAGTCGGGTCAAAAAAGAGAACAAGGCGTCGCCCGTCTTCAAGAGCGAGGAGTCGCAGCAGATGTCGCAGCAGCAGATGATGCTGTGCCCGCAGCAGCAGATGCCGCCGCAGGGCTACGTGGAGGCCGGCCAGCACGCCTTCCTGCAGGGGGTCCCGCCCAACTCCATCAGCCTGCTGGGTACCTCGATAACCTTCAATAACATGCAATAG
- Protein Sequence
- MSQQQYSLRWNNHQPNFISMFTSLLNTQTLVDVTLSAEGKQLLAHKVVLSACSTYFQSLFVDNPSPHPIVILKDVTFTDLRTMVDFMYCGVVNVTEEQLPKVLDTAKLLKIKGLTEMPESTSLTRSQSDRNGGMEQADSMDSQDTTVEPGIKKKRRRKSSPAVVAEPTAEAMASASPQPMEQITFCSVPQRRYNEIRTIDNTPQTQEVAEAADQSVEIIEPAPASQVQGIWTSDGYNQRYNACIGAGMVAGEGGMPYMVGLPAEGAYAAPAECLAGPSAPAPSPSPKLPRASKLLARRKRATNPRSSENFQRALEAVRFGGIGFCKAAKIFGVNNRTLWLEYKKKGYPNTRPSIRSRVKKENKASPVFKSEESQQMSQQQMMLCPQQQMPPQGYVEAGQHAFLQGVPPNSISLLGTSITFNNMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00185448; iTF_00186449; iTF_00186063;
- 90% Identity
- iTF_00185448;
- 80% Identity
- iTF_00185448;