Basic Information

Insect: Autographa gamma
Gene Symbol: -
Assembly: GCA_905146925.1
Location: LR989875.1:5741980-5744827[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.6e-05 0.0087 17.0 5.0 1 23 290 312 290 312 0.97

2 12 5.3 4.8e+02 2.1 0.2 5 14 361 370 359 374 0.84

3 12 0.0013 0.12 13.4 0.5 1 23 388 411 388 411 0.97

4 12 0.0032 0.29 12.2 2.9 1 23 415 437 415 437 0.98

5 12 0.008 0.72 11.0 0.5 2 23 459 481 458 481 0.92

6 12 0.0047 0.43 11.7 2.0 1 23 485 508 485 508 0.97

7 12 0.015 1.4 10.1 0.3 2 23 531 553 530 553 0.93

8 12 3.8e-06 0.00035 21.4 2.7 1 23 563 585 563 586 0.96

9 12 0.014 1.3 10.2 1.4 2 23 602 623 601 623 0.96

10 12 0.0066 0.6 11.2 0.6 1 23 629 651 629 651 0.96

11 12 0.35 31 5.8 2.6 1 22 657 678 657 681 0.90

12 12 0.015 1.3 10.1 0.1 3 23 740 760 738 760 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.6e-05	0.0087	17.0	5.0	1	23	290	312	290	312	0.97
2	12	5.3	4.8e+02	2.1	0.2	5	14	361	370	359	374	0.84
3	12	0.0013	0.12	13.4	0.5	1	23	388	411	388	411	0.97
4	12	0.0032	0.29	12.2	2.9	1	23	415	437	415	437	0.98
5	12	0.008	0.72	11.0	0.5	2	23	459	481	458	481	0.92
6	12	0.0047	0.43	11.7	2.0	1	23	485	508	485	508	0.97
7	12	0.015	1.4	10.1	0.3	2	23	531	553	530	553	0.93
8	12	3.8e-06	0.00035	21.4	2.7	1	23	563	585	563	586	0.96
9	12	0.014	1.3	10.2	1.4	2	23	602	623	601	623	0.96
10	12	0.0066	0.6	11.2	0.6	1	23	629	651	629	651	0.96
11	12	0.35	31	5.8	2.6	1	22	657	678	657	681	0.90
12	12	0.015	1.3	10.1	0.1	3	23	740	760	738	760	0.97

Sequence Information

Coding Sequence: ATGGAATCCACAGTCTTCCCAACTCTCACAGACATGGCTGACCTCGAAACCGAGACAATAATCAAGGAAGAAGAAATAGACGCATTAAACGAAGAAATTCAATTAGAAATTAAATCAGAAATAAATATAGGTGAGACTATCATACAAGAAAATGTCGATAATCCATTCAAAGACGTTCAATTGGAGGTCAAACAAGAGACAATATCTATAAGTATTGAAACCGAGAGTATGGACTCACAGAATGAAAATGAAACTGTACCGAAAATTGAATATAACGATGAAATAGATCCGAAAACTGAAATGGAGTGTATAGAGAAGTTTAAGGAAGAAAGGGTGGTCGGTGATGAGTCGCTAGTTACGTATGACTATCCTAATTTTGATGATGTTGCGAGTATAGATAGCAATGATGCGGCCGCGTTGACGCATGTGGAAGCTTGTTTGCATGATGATATGGATTATAAATGTGAAGATGATGGACAGTATGAGGATCAAAAAGACGATTACGACAAAATGGATATCAAAGAAGAATCAGATCTAACAGTAACAGAGACTCATTTAATATCCAACAAACTGATCAACACTACTTCTACAATAACCAACCCTCATGACGGCCTCATAGAGTCTAAAACCACAAAGACATTAGTCATGGAAATACTGCCTATACCACAAACGAACATGACATTCCCCAAAATAGATGGAAACCCTGAAGAAATCCTGCCGACCAGGTATAATAATCACGACGATTATTTAGACTACGAAGACTCCTTTCAACTAAACTCTATAACAGGTAATGTATTATCCCTTGAACAAGAAGCGTACGGTCTGTTAAAAGCCACAGGAAAGAAAAAGGAATTAGGAGAGGAGTGCCATACTTGCCCAAAATGCCCGAAAACTTACCGCCATAAACAATACATGAAACGGCATTTAGCTGTTCACGATAGCATCGAGAAACGCGCTTTAGGCTTAATTAGGGGTAGGATAACAAAAAAAGAAAATCGTGATAAGAAATTAAAGGCAGAACTCGAAACTAAGATGGCTGTGAAACAAGAAGAGAAAATAAAGAAAGAAGGGTATGAGTGCACTTGTGGCAAAGTCTTCCAAAGACGAAGTAGAATGGAAACTTGTCTAAGATCTCACAACTTATTTTCCGACACAAACACCTACCCCTGTGTGTCTTGTTCAAGACAATTTAAGGACAGAGAAGAATTAGCTCTACATCGAAAAAGGTTACACAGAAAAAAGTTCCCTTGCAAGTTTTGTCCCACCGACTACCACACGCGGAAAGAACTCTTCAAACATCTACAAGTGCACCAAAAAGTACAATTAATGGAGTATAAAGTTATTTCTGAAGTTGTTAAAGGAAAACAGAAACTCAAATGCTTTATGTGTTCCAAAAGTTACATGGAGTTGTCTGATCTAAAGTCTCATGTAATGGATGACCACAAAGAGCCTTATAGTTGTCCGCGCTGCAAGCGAACATTCTCGAAAATCATCGATTTCGGTAACCACACGAAAACCTTTCATCCGGAAGTTGAAGGACAATCTGTTTTGGACGTATTAGAAGCTTTTTCAAAACTGGTTAAAGCTTGGAAATGTGATGAATGTGGCTTACAGTTCCATGAGGCAGATAAACTGGCGATGCATCAGATCGAAAAGCACAGTCCAGAGCTAAAATCTGAAACGCAATTCCAGTGTACGGATTGCCGTAGAGTGTTCGTCAGTCAGAAAGCGTTGACGTCACATAGACGGGTGCATCACAGTACGGAAAGTGTTGAAGAAACTGAGCTAGTCGAGAAAGGAGTCATGTGCCTTGAATGTAGGAAGATCTGTAAGGATATGACCGCTTTAGTCTCCCACATGCGATTCCATTCACCAGATAGGAAATACCCCTGTAAGTTCTGCGACTTTCGCTTCGCTACACCCGAGAAACGGAAAACACACGCAGAAATACACACAGGTGACATGAAATACGTCTGCTTCATCTGCGAATACCAGTGCAGTTCGGAAAATCGACTAAAACAACACAAACTATCGCCTAAACATATAAACATGAGAGAGTTTCTTCTAACTGGTAGACCTATTACAGAGGAAGCTCATTCGTCTAAGCAGGAGAAGATTAAAAATACCTTGAAGAAGAAAGAGTGGGCCATTAAAAAGAGTAAGAGAAAAGAGGTGAAGTCGGAGAGTGACTCTAGTTCTGAGTGCAGTGAGGTGGCGTGTGATATCTGTGGGGATAAGTTTCCCAGTGAAAGTGAGATGCTAGAACATAAACAAACTCACCCGTTTATAGAGTTCCCCAATGAGGATAAGCCTAGCAGAATATTCTTTAAGTAA
Protein Sequence: MESTVFPTLTDMADLETETIIKEEEIDALNEEIQLEIKSEINIGETIIQENVDNPFKDVQLEVKQETISISIETESMDSQNENETVPKIEYNDEIDPKTEMECIEKFKEERVVGDESLVTYDYPNFDDVASIDSNDAAALTHVEACLHDDMDYKCEDDGQYEDQKDDYDKMDIKEESDLTVTETHLISNKLINTTSTITNPHDGLIESKTTKTLVMEILPIPQTNMTFPKIDGNPEEILPTRYNNHDDYLDYEDSFQLNSITGNVLSLEQEAYGLLKATGKKKELGEECHTCPKCPKTYRHKQYMKRHLAVHDSIEKRALGLIRGRITKKENRDKKLKAELETKMAVKQEEKIKKEGYECTCGKVFQRRSRMETCLRSHNLFSDTNTYPCVSCSRQFKDREELALHRKRLHRKKFPCKFCPTDYHTRKELFKHLQVHQKVQLMEYKVISEVVKGKQKLKCFMCSKSYMELSDLKSHVMDDHKEPYSCPRCKRTFSKIIDFGNHTKTFHPEVEGQSVLDVLEAFSKLVKAWKCDECGLQFHEADKLAMHQIEKHSPELKSETQFQCTDCRRVFVSQKALTSHRRVHHSTESVEETELVEKGVMCLECRKICKDMTALVSHMRFHSPDRKYPCKFCDFRFATPEKRKTHAEIHTGDMKYVCFICEYQCSSENRLKQHKLSPKHINMREFLLTGRPITEEAHSSKQEKIKNTLKKKEWAIKKSKRKEVKSESDSSSECSEVACDICGDKFPSESEMLEHKQTHPFIEFPNEDKPSRIFFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00327353;
90% Identity: iTF_01221936;
80% Identity: -