Agaa017422.1
Basic Information
- Insect
- Autographa gamma
- Gene Symbol
- -
- Assembly
- GCA_905146925.1
- Location
- LR989851.1:11431360-11437936[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 1.7e-05 0.0016 19.3 0.6 1 23 202 224 202 224 0.97 2 30 0.00055 0.05 14.6 0.3 2 20 256 274 255 276 0.92 3 30 0.00044 0.04 14.9 0.1 2 23 305 327 304 327 0.96 4 30 5.9 5.4e+02 1.9 0.1 2 13 344 355 343 361 0.83 5 30 0.0017 0.16 13.0 1.9 1 23 374 397 374 397 0.97 6 30 0.001 0.091 13.8 0.9 1 23 417 439 417 439 0.95 7 30 0.0046 0.42 11.7 0.6 2 21 479 498 478 499 0.92 8 30 0.004 0.36 11.9 6.0 2 23 539 561 539 562 0.96 9 30 0.0019 0.17 13.0 0.6 1 23 611 634 611 634 0.97 10 30 0.015 1.3 10.1 0.1 1 23 687 709 687 709 0.97 11 30 0.00086 0.078 14.0 4.2 1 23 720 742 720 742 0.98 12 30 0.0073 0.66 11.1 0.6 2 23 754 775 753 775 0.96 13 30 0.0025 0.22 12.6 1.4 1 23 785 807 785 807 0.98 14 30 0.0073 0.66 11.1 9.2 1 23 836 858 836 858 0.96 15 30 0.0012 0.11 13.6 2.8 1 23 869 891 869 891 0.98 16 30 2e-05 0.0018 19.2 0.5 1 23 899 921 899 921 0.98 17 30 0.00057 0.052 14.6 0.2 2 23 941 963 940 963 0.97 18 30 0.79 72 4.7 0.5 1 23 981 1003 981 1003 0.91 19 30 6.8 6.2e+02 1.7 4.4 1 22 1010 1031 1010 1032 0.75 20 30 0.015 1.4 10.1 2.2 2 23 1043 1065 1042 1065 0.95 21 30 0.0059 0.54 11.4 0.2 2 23 1088 1109 1087 1109 0.95 22 30 1.2 1.1e+02 4.1 3.1 2 23 1152 1174 1151 1174 0.95 23 30 0.031 2.8 9.1 0.4 2 23 1190 1211 1189 1211 0.94 24 30 3.5 3.1e+02 2.7 3.8 5 23 1221 1239 1218 1239 0.93 25 30 0.012 1.1 10.4 0.8 2 23 1250 1272 1249 1272 0.95 26 30 0.049 4.4 8.5 2.3 2 23 1289 1307 1289 1307 0.92 27 30 1 92 4.3 1.7 2 21 1311 1330 1310 1331 0.93 28 30 0.28 25 6.1 1.2 2 23 1380 1401 1379 1401 0.93 29 30 0.00062 0.056 14.4 0.6 2 23 1412 1434 1411 1434 0.97 30 30 0.25 23 6.2 3.9 2 20 1472 1490 1471 1492 0.93
Sequence Information
- Coding Sequence
- ATGGCTCTCAAGCTCGGAAAATGCAGGCTTTGCCTCAAGCTCGGCGACTTTTACTCGATATTTACGGTGGACAATGCCTTGCAACTTGCGGAGATGGCTATGGAATGCGCCCGGGTGAAAATTTACGATGGCGACGGGCTGCCAGACAAAGTGTGCTCGGAGTGCATACAGAAACTTAGCAGCGCGTACATCTTCAAGCAGCAGTGCGAGCGCGCCGACCAGGAGCTGCGGCGCAACTATGTGCCGCCACCAGGGTTTAGTATCAGCCCTACACCACCAACAAGACAAAGCAGCGATTCCGCGTTTTCAAATCATACAGACAGCTCCAACTTAACCAAACAGGCGTCTTCGTTTGAAGAGAAAGAATCTCCCGCTACCAAAAGTAGGAAACGCAGCATCGACAGCGGAGACAACGGCTCCATAGGCGGCGCGTCCAGTGACTACAGACCCAGCGGCTCCAAGCGTATCGAAGAACTAAGGAGGTCACAGAAAAGGCCAAGGGTGCAGTCCGGGAACACGTCGCAGTTGGACTCGGATTATGAAGACAATAGCGCGTCGTACGCTCTGGAAACAGATTCCGACGAACCTCTACTCAGAAATAATTTCGACTGCAAAATATGTCCTAGACAATTCACAAGCAGACGAAGCCTCGCTAACCACGTAAGAATACATGAAAAATTACAAAAAAAAGATGGTTTAGCAGGAAATGTCGTGGTCGAAATTCCGCAGAAGGTCGAGGATGCGGCTGACGCAGAGGATAAACTGAGCTGTAACAAATGTGGGAGGACTTTCAAACTGAAAATCATGCTGAATAGGCATTACGAGGTGTGCGGCAAGATTCCCGTCAAGTCACCGCAGAAGGAGCTGCTCGTGACGCTAGAACCTATTGACGGAATGATGAACCGGAATATTGTGTGTGAAATATGCAACGCCAAGTTCAAAGCTATAGAAAATTTGGAAAAGCACATGAAAGTCGTACATGCGGCCGTTTTAAAACGAGAAAAACGTGAGAATAGTAAGGTGCCAGTTCCGTGCCTCTATTGCCACGAGGTGTTCGACGACTACTACGCACATAGCGCACATTTCTACGAGTGTCCGCGGAAAGATGATTCCCTGCCATATGAATGTCCCGTTTGTAAGAAGCTTACGACGAGGAAAACCTCATACTTCCAGCATATTAAGAACATGCACTTTGAGCCCCGTTCGTCCTTCGCAAATACTTCAATAGAGGCTGAGCCTGAGACTTATCATGAATGTAGAATGTGCAACAAGAAGCTCTCTTCACAAGACTTGTTGATCAAGCATTTAGCTGCCCATATGTCCAATATTGAAGACAACGATGTCGGCGCTGATAATGAGTCGCGGGCTAGCACTATCGAAGATTCTGCGTCAATCCAATCCATACACAGCAACTCCAATACTCCAGGTTGTATTAAATGCTCGAGGTGTGACAAAGAATTCAAATATAGGAAGGCGCTTCTTACTCACGAAATGAAATGTACGGAAGTGCCGGTGGAGGTGAAGGCCGAGCCCCCGGACAAGCCGTCCACGAGCCTGCTGAGCGAGGCCGCGTACCGCCAGTCCGACTCCGAGTCCAGCCTGGAGGACGACAACACCTGCGACATCTGCGAGAAGGAGTTCTCCTACCGCCGCCAGCTGCTGCACCACAAGAAGACCAAGCACCACATGAGCTCGGGACACAAGCGCGCCAAGATCTACCTCAAGGACTGCAAGGTCCGCTGCATGATCTGCGACGTAGAGATGAAGGTCGGCGATATCAACGAGCACAATCAGAAACACATCTCTAAGAACATGAAGCCCCGCAATCTGTACACATGTGCAGAGTGCGAGGATACCTTTAAGAGTTGTTCAGCGCTCGCGAACCATATCAAGCTGATACACAGGTTGAAGCAGAAGAAGTTGGAGCTGGGCGTCGACCCGGCGGATTTTTGTGAAGTCGTTGTGACAAAAGCGGAACCCCTGGACTGGAGCCAGAGTCACAACGACTTTGGAGAGGTTCCGGGCGTGGAGACCAAGCCGCTGGTAGACCTTAGCGGCTTCACATGTCCTATCTGTGCCAAGAAAATGCCAACGCTCATATCTCTGAAGCGACACGTCAACTGGCATTCAAATGTTGGAAATAATATCGAGAAGAAGTATGAATGTGTTGTTTGTAATGAGGCGTTCAAATTCCAATGCCACTACAAGATCCACATGCGGGAGCACTACCACGACACGAACCTGGACCCGAAGCACCTGACGTGCAGCATCTGCGGCCGCGTGAGCAAGCACCTCCGCGCGGCGCAGGCACACATGAACTTCCACAAGCAGACCCGCTTCCAGAACAAGGACTACCAGTGCTCCATCTGCGAGCGCGTCTTCCAGCACCGGAAGGTGTACCTCTCCCACATGGCCATACACTACAAGAAGGGCGACGTCGTCCACAACACCATCGTAGGCGACGTGCTACCCAACACGGCCGACAAGAACGTGTTCGACGGTACCCACAAGTGCCACCACTGCGGCAAAGTGTGCGATTCAGAAAACTCCCTCAAACATCATCTAATCTGGCACACGTCCAAGACATTCCTGTACGGCGCCCGACACGAGTGCAGTATCTGTAAAGTTAAGTTCACAAACAAAAGGAGATTAGAGTTACACGTCAGGTCCCATTACGAAGATGATAATGGACCCTACAAATGCACCATCTGCGGTAAAGGGTACACTGATGAAGGCTACTACCAAAAACACGTCAAAGGACACAACTTTGATCACCAGTCTCACAAAAAGAGAATAGAAAATATTAGGAAGGATAAAGTCAAGTGCCCAATATGTTCTCGCTATTACCCAGACTTAGTCAAACTTATTCGCCATTTGAGGCGGACGCATCCCGAAAGTAAGATGATCAAGACTGACCCCGACGCGCCTCCGCAGCCATACTTCTCTTGCAAACTATGCGCCAAAGTGTTCCTCGATCAACGCAGGCTGCAGTATCACGAGGAAGCTCATCTCAGAAAGCCAGAATTCTTTAAATGTAAGTTTTGTGGAAAGAAAACCATATCACTAAAGAGTCATCGATTTCACATAAAGAGTCATTTGACGCAGAAGCACTTGGACAATCCACTGAAATGTTCTCACTGTGAGGAAACCTTCGTGAAGGGCTATGACTTGCACTACCACCTGCGTGATGCCCACGACATCAACGAGACGTGGATCGCTGAACGCACCGAACAAACCCTCAATGGCCCGTTAAAAGATCTGCAGTGCTCCATATGCATGAAAGTCCTTGCAACTAAAGGGAATTTTGAGCGACATATTGATTACCACAACTCATTAAGATGCAACTACTGCTTTGATTACTTCAGTTCACTTAGATTCTTGGAGGGACATCTAACATTCTCGTGTGAAAAGAAGAAGCTTCTAGGTGACACCGAAGTTTATCCTAAGAAAGTGAAATGTGATATTTGTTACAAAGCATTCCACGTTCAAGTCAAACTAGACTGCCACTTGCGCACGCAACACGGGATCAAGGTGAACAAGGAAGCTTCGGCAGGGAAACAAGAGATCGTCTGCGACTTCTGCTTCAGGGTGTTCGAGAATGAGTACGCTTTATCTACTCATAAAACTTACCATCGTACTGTCGGCTTCTATGGATGCATTTACTGTAACAAGAAGTTCAACACAATGACGGTCTACCGCAAACACAAGAACCACCATTTCTCGCAGCTGAACGTGGACAACCCTACCAAGTGCGAGCATTGCGACGAAACGTTCGTAGCGTTCAGGGAGATGATATACCACATGAGAGACGTGCACGGCGACGACAAGGAGTGGGTCATAGAGCCGAAGGAGTCCATCGAGGAGACCTGCCCCATCTGCAACAAGGTGTTCTACAACCTGCACAAACACCTCAGCTACCACGAGGACAACAAGTGCAAGAAGTGCAGCGAGTACTTCTACTCCAGGGTAGACTACGATAACCATCTCTGTGCCGTCGAGAGCGACGATGAAGGCTTTCCAGCCGCAGGAACGGAGCAGGCGGCGCAATACGAAGAGTGCAAGTTTTGCTTCAAACCCATCACGAAGAAGAGTTCCAAAGCTAAACATGATCACATCCACAAGGGATCCGGCTCTATTTCCTGTAGATTCTGTAAGCTTAAGTTTAAGACTATGGACGCTTTTAATATTCACGCCTTTTCACATCGAAGTAGAAAATACAATAAGAAGCCCATTAAATGCAGAAAATGTGGCGAGAAGTTCGTGAAATACGGACCGTTCATAAAGCATATGAAAACAGTTCATAAATCATTGAAGAAGATACACTACCGGGCTGTGGTGAAGCCCGAGACGTGCGTCGTGTGCAGAGAGGACTTCCCGAACCTGCACAACCACTACCGCGCTCACTTGTTAAACCAGTGCCACGATTGCCGCAAGTACTTCACATCCTACAGGCTGTTCACTTTGCACGAATGTGACAAAGAGGACGCGGATCCATCGAAAGTGTTCACCAGTGACGCGAACCTCACCGAGTTGATAAACACCTACGTTCCTAAGGATGAGAAGGATGATGAGAAGTATTACGGGCACAGTGACGACGAGGAAGAAGAGGAGGAGTACGTGGAGCCGCTGGTGTACGCCGACGATGAGAGCCAGGACCAGGAGACACAGGACCTGCCGCTCATGGCACAGTCACCAATCATATCGGATGTTCTGTCGCTGTACAAGCCGGATACTAACGGAGTGAATGATGACGTCGTCAACATAACTGACGATGAGTCCATCGACTTAAATCACGCTGCTCCAGTCGTAGTTATCGACGATGATGATGATTAA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFTVDNALQLAEMAMECARVKIYDGDGLPDKVCSECIQKLSSAYIFKQQCERADQELRRNYVPPPGFSISPTPPTRQSSDSAFSNHTDSSNLTKQASSFEEKESPATKSRKRSIDSGDNGSIGGASSDYRPSGSKRIEELRRSQKRPRVQSGNTSQLDSDYEDNSASYALETDSDEPLLRNNFDCKICPRQFTSRRSLANHVRIHEKLQKKDGLAGNVVVEIPQKVEDAADAEDKLSCNKCGRTFKLKIMLNRHYEVCGKIPVKSPQKELLVTLEPIDGMMNRNIVCEICNAKFKAIENLEKHMKVVHAAVLKREKRENSKVPVPCLYCHEVFDDYYAHSAHFYECPRKDDSLPYECPVCKKLTTRKTSYFQHIKNMHFEPRSSFANTSIEAEPETYHECRMCNKKLSSQDLLIKHLAAHMSNIEDNDVGADNESRASTIEDSASIQSIHSNSNTPGCIKCSRCDKEFKYRKALLTHEMKCTEVPVEVKAEPPDKPSTSLLSEAAYRQSDSESSLEDDNTCDICEKEFSYRRQLLHHKKTKHHMSSGHKRAKIYLKDCKVRCMICDVEMKVGDINEHNQKHISKNMKPRNLYTCAECEDTFKSCSALANHIKLIHRLKQKKLELGVDPADFCEVVVTKAEPLDWSQSHNDFGEVPGVETKPLVDLSGFTCPICAKKMPTLISLKRHVNWHSNVGNNIEKKYECVVCNEAFKFQCHYKIHMREHYHDTNLDPKHLTCSICGRVSKHLRAAQAHMNFHKQTRFQNKDYQCSICERVFQHRKVYLSHMAIHYKKGDVVHNTIVGDVLPNTADKNVFDGTHKCHHCGKVCDSENSLKHHLIWHTSKTFLYGARHECSICKVKFTNKRRLELHVRSHYEDDNGPYKCTICGKGYTDEGYYQKHVKGHNFDHQSHKKRIENIRKDKVKCPICSRYYPDLVKLIRHLRRTHPESKMIKTDPDAPPQPYFSCKLCAKVFLDQRRLQYHEEAHLRKPEFFKCKFCGKKTISLKSHRFHIKSHLTQKHLDNPLKCSHCEETFVKGYDLHYHLRDAHDINETWIAERTEQTLNGPLKDLQCSICMKVLATKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLTFSCEKKKLLGDTEVYPKKVKCDICYKAFHVQVKLDCHLRTQHGIKVNKEASAGKQEIVCDFCFRVFENEYALSTHKTYHRTVGFYGCIYCNKKFNTMTVYRKHKNHHFSQLNVDNPTKCEHCDETFVAFREMIYHMRDVHGDDKEWVIEPKESIEETCPICNKVFYNLHKHLSYHEDNKCKKCSEYFYSRVDYDNHLCAVESDDEGFPAAGTEQAAQYEECKFCFKPITKKSSKAKHDHIHKGSGSISCRFCKLKFKTMDAFNIHAFSHRSRKYNKKPIKCRKCGEKFVKYGPFIKHMKTVHKSLKKIHYRAVVKPETCVVCREDFPNLHNHYRAHLLNQCHDCRKYFTSYRLFTLHECDKEDADPSKVFTSDANLTELINTYVPKDEKDDEKYYGHSDDEEEEEEYVEPLVYADDESQDQETQDLPLMAQSPIISDVLSLYKPDTNGVNDDVVNITDDESIDLNHAAPVVVIDDDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00785388;
- 90% Identity
- iTF_00186494;
- 80% Identity
- -