Agaa019498.1
Basic Information
- Insect
- Autographa gamma
- Gene Symbol
- clz9
- Assembly
- GCA_905146925.1
- Location
- LR989865.1:10956971-10958767[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-08 3.7e-05 23.9 0.0 2 39 16 52 15 56 0.89 2 2 10 8.5e+03 -2.9 0.0 29 36 291 298 291 300 0.83
Sequence Information
- Coding Sequence
- ATGCCAAGGAACTGGACAAGAAAGACCTCTAAAGCGAGTTGGACTGCAGATGACCTGCAGGCAGCTGCTGTACGCATTAGACAAGGCGTGTCAATACGCAAAGTTGCCAAGGAAACTGGTATTGCTTTCAGCACATTACAAAGAAGGATGAAGAAAGATATATTTAAACCTCCAAAACTAGGAAGGCATGCCGTTTTTAATGAAGAGCAAGAAAACATACTTACAGAGCGTATTTTAAAATTAAGTAATATGTTTCATGGTTTGACGGCAAATCAACTAAGAAAAATAACATTTCAATGTGCTGAAAATTTAAAACTGTCTCATAATTTTAACAGAGATACTAGAATGGCTGGCAGAGACTGGATCCAAGGATTTCTTAAGAGAAATCCACGGATAAGCATTCGAAAACCTGAAGCTCTAAGTATACAGAGAATAACAGGTTTTAATAAAACAGAAGTAAATAATTTTTTTAAAAACTTGGAAGAAGTTATGACAAAAACCTTATTCTCACCTCAAGATATTTACAACATTGACGAGACAGGTATTACCACCGTCCAGGAAACCGAAAAAATCCTGGCTACAAAAGGTCAAAAAAGAGTGGGTTCTTTGACTTCTTGGGAGAGAGGTAAAACGATTACCGTCATTTGTTGTATGAGTGCTGTTGGAACATTTATACCTCCTATGTTCATCTACCCACGTAAAAGACATTCACCACATCTTGAGAAGGATGGACCATTAGGTGCGGCATATGATAATTCTAAAAATGGTTGGACAAATGAAGAACTATTCATGAAATGGTTACAACATTTCGTGAAAACCGCTAAACCGAATGAGAAGAAACCAGTTTTATTAATATTGGACAACCATTACAGTCATTCAACCCTCGAATCATACAATTTCTGCAGAGAACATTTCATTACTGTGGTGTCCATTCCTCCTCACACATCACATATGCTTCAACCTCTTGACGTGGTTTTCTATGGTCCTCTGAAGAAAGCTTACAACAGAGAGTGTGATTTATACATTAAATCACATAATTTGCAAAAAATCACACCATATGAAGTCGCTGGAATTTTTAACAAAGCCTATATGAGAGTTGCTTCAGTAGAGAAAGGAGTCAGTGGCTTTGCATCAACAGGAATATTCCCACTCAATCCTCACAAGTTTAAAGACGAAGATTTCTTAGACGCCTCTGATGTTCCCTGTGTTGAAGAAATTTTTGCAAGCAGTAAGAATGCTTCGGAACCGCAACCTTCCACAAGTGATCCAAATTATAACCTAAATGATGGTATAAATCAAGAGAACAATAAATCCGACACGGAACCTTTAACTAGCGTACTCTCACAACTAACACCTCTGCCTTGCATTGGAAAAGGTAAAGGCAAAGGAAAAAGAACACAACGATCAGAAATTCTTACTGCCACACCTCTGAAAACGGTTTTAGAAGAAAAAGCTGAGAAACGAAAGGAAAAAGAAAAGCATACAAAAGGCAAAGTCACGAAGAAAATAAAAGGAGTAAAAAAGAACTTATTTAAGTCTAGTTCATCTGAAGAATCGGCTGATGAACAGGTTCTTCATGATGAGAGTGGTGATAGTGACTTAGAAAATATTGAAATCCCACTAAACATCCCGCAAACCTCCCAGAAAGAGCGTGTTCAGTCTGTGTGCACGATTTGCCTAGAAGAGGGAAAACCGAGAGAAATCTGGTACCGTTGCCGTCTCTGTGCTGGATGGGCCCATGAGGCATGTACAGGATGTGATGATCCAAGTCGCTATCGCTGTGATTTCTGCATTTAA
- Protein Sequence
- MPRNWTRKTSKASWTADDLQAAAVRIRQGVSIRKVAKETGIAFSTLQRRMKKDIFKPPKLGRHAVFNEEQENILTERILKLSNMFHGLTANQLRKITFQCAENLKLSHNFNRDTRMAGRDWIQGFLKRNPRISIRKPEALSIQRITGFNKTEVNNFFKNLEEVMTKTLFSPQDIYNIDETGITTVQETEKILATKGQKRVGSLTSWERGKTITVICCMSAVGTFIPPMFIYPRKRHSPHLEKDGPLGAAYDNSKNGWTNEELFMKWLQHFVKTAKPNEKKPVLLILDNHYSHSTLESYNFCREHFITVVSIPPHTSHMLQPLDVVFYGPLKKAYNRECDLYIKSHNLQKITPYEVAGIFNKAYMRVASVEKGVSGFASTGIFPLNPHKFKDEDFLDASDVPCVEEIFASSKNASEPQPSTSDPNYNLNDGINQENNKSDTEPLTSVLSQLTPLPCIGKGKGKGKRTQRSEILTATPLKTVLEEKAEKRKEKEKHTKGKVTKKIKGVKKNLFKSSSSEESADEQVLHDESGDSDLENIEIPLNIPQTSQKERVQSVCTICLEEGKPREIWYRCRLCAGWAHEACTGCDDPSRYRCDFCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00745634;
- 90% Identity
- iTF_00186118;
- 80% Identity
- iTF_00185258;