Asol003755.1
Basic Information
- Insect
- Aulacorthum solani
- Gene Symbol
- -
- Assembly
- GCA_008528875.1
- Location
- PVMI01033301.1:3855-12915[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.3 1.8e+03 0.7 0.0 8 21 180 193 180 194 0.87 2 13 0.01 2 10.0 3.1 1 23 228 250 228 250 0.95 3 13 0.00081 0.16 13.5 1.7 1 23 256 278 256 278 0.98 4 13 1e-05 0.002 19.5 1.9 2 23 284 305 283 305 0.97 5 13 0.0031 0.61 11.6 0.1 2 20 312 330 311 332 0.91 6 13 0.00019 0.037 15.5 1.4 2 23 352 373 351 373 0.97 7 13 6e-05 0.012 17.0 4.0 1 23 384 406 384 406 0.98 8 13 0.00025 0.05 15.1 8.5 1 23 412 435 412 435 0.98 9 13 0.025 4.9 8.8 3.6 1 23 445 468 445 468 0.97 10 13 1.5e-05 0.0029 19.0 1.3 2 23 730 751 729 751 0.97 11 13 3e-06 0.00058 21.2 0.6 1 23 757 781 757 781 0.98 12 13 0.00038 0.074 14.5 0.3 2 23 789 810 789 810 0.97 13 13 0.00014 0.028 15.8 1.0 1 23 816 838 816 838 0.98
Sequence Information
- Coding Sequence
- ATGACTCAACACGACAACAGTCGGCTCTCGGGGTACATTCACCCCTTCGTGTATGTGATGTGCCACACAAACGACACACCTGCCCACCATATAGAATCGGTAGAAAATGCCAACATTTTGGACATGGATGATCAACTAGATATTATGTTGGACAATTCCAATTCAGAATTTATTACCTTATCGTATACTGATCATTCATTGATCTCTAATCCCGAACAATTAGCTGACGATTGTGCTGATATGAtattaGAACAGAATAATTGTCAAGATATGAGTACCATGGTTCCATTAAACGATTTGCTGTTGGGGCAAACATTCTTAATAGAGACTAATGAACAACCATTATTTGTAAATGGTGCAGAGttgatTACATTCCAACATATTGATTCTAACGGACAAATAAATGATATCCAgactatttcaaataatattgaatctgATAAATctacaattgaaaatattaattttaccatgAATTCTGATGATCCCTTCCAAGAAATTTATACAGACCttaatCAAACTGATTTGGATATAATGAAAACGACTAATGACAGTAATAACTTGACAGAACATTTACAAGTTAAGGTTAACACTGATGTAACTAGTGGGAACTACAGTTATTCAACtgctattaaaattttagatgaTGTTGCTAAAAGTCCTGTTGATACTAATggCCATTTTGTTTGTGATTTATGTTTACATGAATTTTACAACtggaaaaattataagaaacatAAACTTGATCATCTAAATGATAAaccatttaaatgtttgaaatgtttaaaatcatttaattacaataataattatttacttcacATTGCTTCTCATTCAACAAGTAATTTGAAATgtccaaaatgtaaaaaagaatttaaacGCTTTGCTAGCTTCAAGGCTCATctgaaaattcataaaactGAAGAATTGATTACATGTAatatttgtgataaaatatttgacaatcagtaTCGATTGGACATTCATAAAGAAAATTGCATGcaagaaaatgtaattaatccTGGTGAAGAAACATCTGTTGCTTGTATTAAAACTTGCACAACTTGTAATATGTCTTTTTCAACTgtatcagaatataaaatgcacATCAAAGAACATAGAAAAtttgattcaatattgaataaatatcataagtgCACAGATTGTTCAGTATATTTTACTcaacaaaattcattaaatagaCATCTGATGAAACATAAAGGAATAAGACCATTCAGATGTGAATTCTGTGAAATGAGTTTTTGTCAAAAAGgtcatttaattaatcatatgaaaaaatgtcatgCTGTTAAAAAAGAAGCGACAAGAATTCATAAATGCTCTATGTGTTCGTGTGTTTATAACAGTGTTAATGCTCttagtaaacatttaaatgttttccatggagtaaaaactaaaaatgcacATGCAAATGTTCAAAATCAAGTAACAAAGAGTGAAGAAACGGTTGATGAAACTATACATTTGattaaagattcctCAAAGTTAGAACAATGGCTTGAAGAAGTAGCTTATGAGTTGCAAAGTGGTGATACTAATACAAagttaaaaaattgcGACGATCCAATTACTACTCAATGTGAATTTGgattaaatttgattgaaaatgaACACTATGATCACATTTTAAGTCCGATTTCTAATATAGCTAGTGATCACACTGAAATTGAAAACTTGACATATTCTCTTGTagatgGTGATACCTTTATTGTTCTGAAGAAGAAACAAAACCAACCATCAATCGAAAATGATGTTGTTCAAAaccaaGAAACGGAAAAGGAACTATTAACGACTGTTACTGAAGATGAATCAGCATCACTAAATGTTGTTAAAGAAACTACTAAaaagggAATAGAATCTGTAACAAGTGCTACTGAAAATGaatcaatatcattaaatgttGTAGAAGAAACCACTaaaaagGTTCCtccaagaaaaaataaatgtgggaataaaatgtctaaattgGGTGCAAAAAAGAGTTTaccaaaacataaaaaagcGTGTccatcaaatttgaaaaaaaggaaTACTATCAGTAATGAAGTTAAGAGAAATATAAATCATGCAAGTAATAAAGATGAGCCAAAAGTTGTATATGTACCAAATATTGCTACTAATTCAGAAGAAAGAACCATTAgtattACTCAAAAACCATTGCCAAAAGTGTGTCAGTtctgtgaaaaaatatttaaaaagaaggCCGATCTCGAAAGACACGAAAGAACACACACCGGTAACAAACCATATAAATGCGATGAACAAGATTGTAATAAAGCATTTGCCACTAAGAGTTCGCTTGAATATCATACAATCACTCATTCAGGTAAAATGAAACGAGCCGAGTGCCCTCAGTGTAATGGATTATTTGCTACAACATCAACTTTGAAAGTTCACATGAGACAACATACAgGCGAAAAACCGTTTAAATGTCCTGTATGTGGAGATGCATTTCGAACAACTGGACATTTACATACACATGTGATAATCCATGAACGAAAAAAGAAacgcaaataa
- Protein Sequence
- MTQHDNSRLSGYIHPFVYVMCHTNDTPAHHIESVENANILDMDDQLDIMLDNSNSEFITLSYTDHSLISNPEQLADDCADMILEQNNCQDMSTMVPLNDLLLGQTFLIETNEQPLFVNGAELITFQHIDSNGQINDIQTISNNIESDKSTIENINFTMNSDDPFQEIYTDLNQTDLDIMKTTNDSNNLTEHLQVKVNTDVTSGNYSYSTAIKILDDVAKSPVDTNGHFVCDLCLHEFYNWKNYKKHKLDHLNDKPFKCLKCLKSFNYNNNYLLHIASHSTSNLKCPKCKKEFKRFASFKAHLKIHKTEELITCNICDKIFDNQYRLDIHKENCMQENVINPGEETSVACIKTCTTCNMSFSTVSEYKMHIKEHRKFDSILNKYHKCTDCSVYFTQQNSLNRHLMKHKGIRPFRCEFCEMSFCQKGHLINHMKKCHAVKKEATRIHKCSMCSCVYNSVNALSKHLNVFHGVKTKNAHANVQNQVTKSEETVDETIHLIKDSSKLEQWLEEVAYELQSGDTNTKLKNCDDPITTQCEFGLNLIENEHYDHILSPISNIASDHTEIENLTYSLVDGDTFIVLKKKQNQPSIENDVVQNQETEKELLTTVTEDESASLNVVKETTKKGIESVTSATENESISLNVVEETTKKVPPRKNKCGNKMSKLGAKKSLPKHKKACPSNLKKRNTISNEVKRNINHASNKDEPKVVYVPNIATNSEERTISITQKPLPKVCQFCEKIFKKKADLERHERTHTGNKPYKCDEQDCNKAFATKSSLEYHTITHSGKMKRAECPQCNGLFATTSTLKVHMRQHTGEKPFKCPVCGDAFRTTGHLHTHVIIHERKKKRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00019589;
- 90% Identity
- -
- 80% Identity
- -