Asol034825.1
Basic Information
- Insect
- Aulacorthum solani
- Gene Symbol
- egg
- Assembly
- GCA_008528875.1
- Location
- PVMI01004158.1:3109-5715[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.1 1.3e+03 0.1 0.0 46 74 71 116 68 119 0.67 2 2 3e-09 3.6e-05 24.3 0.0 5 73 101 162 97 165 0.85
Sequence Information
- Coding Sequence
- atgcgtggacatttatcaaaatctaGACAGAGTTACTATAAAAAACCATCTCTCGAGAACAAGACTAAAAAATCTAACGTAACTGAAAAAAGTACACACGAGGAAGCTTATAGTAATAAGATTGAAGACACACCATTAGAAAACATTAAGAAAccaatgaaaattgaaaacatattactaaaaacacaaatcttacaatcatcaaaaattattccaagctttaaaacatatattgatCACAATTGTGATCATTCTTGTGCAGAATTGACTGGCTACGATCaagataaaacaaacaaaattaatgtgtTGGCAATACCATTACATTTTGGTTTCAATAGATATACAACAAAAAGTATTCGAAAACCGATAACATACTATGAGACTCCTTGTGGTgtgtttattcaaaatatcagAGAAATGATGCATTATCTTACAAAGACCGGAAGTAAAATGACAATCGACCAATTTGACTTCAATAGCAGTGTGAAACCATTAGCCCAATTCAATGTTTCAAGGCCCATTAGGTTTTTAGACGATTTATCTAAAGGCTTAGAATTCAGACCAATAACCTgtgtaaatagtattaatgatgaattaccagcaaaaatgaattatatgatTAGTAGACAAGCAACAGCCGGAGTCAACATAAATGTAGAAACTAATTTCTTATGTGGATGTGATTGTACAGACAACTGTGAAGACAAATCAAAATGTGCTTGTTGGCAGAGTACAATAAATGGACAAAGTAATATACCAGATCtcgaaaaaaatgcaaatgcaGGTTATAAGTATCGACGATTATACGAAAATGTACTAACTGGTATTTATGAGTGCAATAAGACTTGCAAATGTCACAGTTCTTGTTTAAATCGTGTTGTGCAACAGCCCATGACTCATAACTTACAATTGTTTAAGACAGAGAAAAAGGGTTGGGGTGTACGTTGCTTAAATGATATACCACGAGGAACTTttatatgttgttatattGGAAACATACTAACCGAGACTAATGCCACAGAAGAAGGCGAAAAAAACGGTGACGAATACTTAGcagatttagattttattgaaGTAGTTGAGAAATGCAAAGAAGATTATGAAGAAAATGCTTTTTCAAgtcaaaaaaacatcaaacatCAAAAACTGTCTAAAAAAACTATGAATCTATCAAATAAACTTAccacaaaaaaatcatctaatGGTCACATTCAAACAATGTTTaaagatgAGAATTTGGCCGTGAACAATACATTTCCAATGCAGTCCAGAAACCTCGAACACAAAAACTTTTCCTCAAatagacattattataaacctcGAAAATCAGTACGTTACTACTATGGTAAGGGCGATGGTGTATACACAATCAATGCAAAATGTAGTGGCAACATTGGACGATATTTCAATCACTCATGCACTCCAAacttatttgtacaaaatgtgTTTGTGGACACACACGATTTACGTTTTCCGTGGGTATCGTTTTTTTCGGAACATTACATACCAGCTGGAACTGAACTTACGTGGGATTACAGTTACGAGGTAGGAAGCATTCCAGGTAAAGTGATGACTTGTTATTGTGACTCAGCTAAATGTAAACGTAGACTTCTCTAA
- Protein Sequence
- MRGHLSKSRQSYYKKPSLENKTKKSNVTEKSTHEEAYSNKIEDTPLENIKKPMKIENILLKTQILQSSKIIPSFKTYIDHNCDHSCAELTGYDQDKTNKINVLAIPLHFGFNRYTTKSIRKPITYYETPCGVFIQNIREMMHYLTKTGSKMTIDQFDFNSSVKPLAQFNVSRPIRFLDDLSKGLEFRPITCVNSINDELPAKMNYMISRQATAGVNINVETNFLCGCDCTDNCEDKSKCACWQSTINGQSNIPDLEKNANAGYKYRRLYENVLTGIYECNKTCKCHSSCLNRVVQQPMTHNLQLFKTEKKGWGVRCLNDIPRGTFICCYIGNILTETNATEEGEKNGDEYLADLDFIEVVEKCKEDYEENAFSSQKNIKHQKLSKKTMNLSNKLTTKKSSNGHIQTMFKDENLAVNNTFPMQSRNLEHKNFSSNRHYYKPRKSVRYYYGKGDGVYTINAKCSGNIGRYFNHSCTPNLFVQNVFVDTHDLRFPWVSFFSEHYIPAGTELTWDYSYEVGSIPGKVMTCYCDSAKCKRRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01031973;
- 90% Identity
- -
- 80% Identity
- -