Basic Information

Insect: Augochlorella aurata
Gene Symbol: RREB1
Assembly: GCA_028455555.1
Location: CM052150.1:9168631-9176060[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0048 0.39 11.2 0.5 1 23 72 94 72 94 0.96

2 16 0.00079 0.064 13.7 0.3 1 23 108 130 108 130 0.97

3 16 4.5e-06 0.00036 20.7 1.1 1 23 136 159 136 159 0.98

4 16 0.34 27 5.4 0.0 1 23 355 379 355 379 0.92

5 16 0.65 53 4.5 1.6 2 23 385 407 385 407 0.92

6 16 3.8 3.1e+02 2.1 0.3 1 19 463 481 463 483 0.79

7 16 0.49 40 4.9 0.1 1 23 597 619 597 619 0.96

8 16 0.0052 0.43 11.1 0.0 1 23 628 650 628 650 0.98

9 16 0.029 2.3 8.7 4.2 1 23 656 679 656 679 0.97

10 16 0.018 1.5 9.4 1.9 3 23 1057 1078 1055 1078 0.95

11 16 0.0006 0.049 14.0 0.1 3 23 1347 1367 1345 1367 0.97

12 16 0.79 64 4.2 6.1 1 23 1373 1396 1373 1396 0.96

13 16 0.0038 0.31 11.5 2.2 1 23 1434 1458 1434 1458 0.97

14 16 1.7 1.3e+02 3.2 5.7 1 23 1541 1564 1541 1564 0.95

15 16 0.01 0.83 10.2 0.4 2 23 1615 1636 1614 1636 0.94

16 16 1.2 98 3.6 8.2 1 23 1642 1664 1642 1664 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0048	0.39	11.2	0.5	1	23	72	94	72	94	0.96
2	16	0.00079	0.064	13.7	0.3	1	23	108	130	108	130	0.97
3	16	4.5e-06	0.00036	20.7	1.1	1	23	136	159	136	159	0.98
4	16	0.34	27	5.4	0.0	1	23	355	379	355	379	0.92
5	16	0.65	53	4.5	1.6	2	23	385	407	385	407	0.92
6	16	3.8	3.1e+02	2.1	0.3	1	19	463	481	463	483	0.79
7	16	0.49	40	4.9	0.1	1	23	597	619	597	619	0.96
8	16	0.0052	0.43	11.1	0.0	1	23	628	650	628	650	0.98
9	16	0.029	2.3	8.7	4.2	1	23	656	679	656	679	0.97
10	16	0.018	1.5	9.4	1.9	3	23	1057	1078	1055	1078	0.95
11	16	0.0006	0.049	14.0	0.1	3	23	1347	1367	1345	1367	0.97
12	16	0.79	64	4.2	6.1	1	23	1373	1396	1373	1396	0.96
13	16	0.0038	0.31	11.5	2.2	1	23	1434	1458	1434	1458	0.97
14	16	1.7	1.3e+02	3.2	5.7	1	23	1541	1564	1541	1564	0.95
15	16	0.01	0.83	10.2	0.4	2	23	1615	1636	1614	1636	0.94
16	16	1.2	98	3.6	8.2	1	23	1642	1664	1642	1664	0.98

Sequence Information

Coding Sequence: ATGGATATTCCGGTTTTCGAAGGACTAATTATCTGGAACTCGTTAGCTCTGGGTATCGGTCGATCGCGGAGACACAGCAGAGTTAATTGTTCCTTGAGGCGACAGTTTGTGGAACTAGTGACTGTCAAGAGTGGACTCAACCAGGCAAACGACACCGAGGCTCAAGTCGATGCTGCATCGCCGCTATCTAGTGTGGATCTGCCAGAATGCGCGCACCCTTGTCCCGCATGTCCCACTGTGCTGTCTAGCACTCACGAGCTAACGAACCACCTGCGCGGCCACAACTCTCCCCGCAGCACAGACTGCAGCGGCGAGGAGGATTACTGTTGCGGTGTGTGTAGCAAGGTACTGAGTTCGGCGAGCTCGTTGGACAGGCACGTGTTGGTGCACTCGGGCGAGCGTCCGTTCAAATGCAAGTCCTGCGACATGGCGTTCACGACGAACGGTAACATGAACAGGCACCTGAAAACAGCGCACGGGTCGTCGTCGCCGCACAGTTGCACGGACTCGGAGGGTAGCAGTGACTCGGACAATCCGTCGAAACGTCGGCACATCGAGGAGTACAACAACAACGAGATCGGAAAGAAGAAGATGCCGAGCCTCAAGCGAAAGTCACCGGACTTGATCGACCGGAAGAAGAAGTTGCAGGACGTAAAGCGGAAATGCACGGACTTCATCGACCGGCAGGATAATTCGCCGGATCTGAAATCCAAATCACCGGACTTTATCGATCGGCAGGAGAATATGCCGAACCTGAAGCGGAAATCGCCAGACTCCATGGACCGTCAAGAGAATGCGCCGAGCCTGAAGCGGAAGTCGCCGGACTTCATAGAATGGCAGGAAAATGTGCAGAAGTCGCCAGACTTCGCAGACTGGCAAGAGAATGATTCGAGCTTGAAGCAAAAGTCACCGGACCTCGTAGACCATCAGGAGAATATGCAGGCCTTAAAGCGGAAGTGCCCGGACTACGTGAACGACAGCGAGAGCCTGAAGAGGCACAAGATTATGTTGAACAACGTTCGTATGGAGATCATGGTGAGCCCGGACGACAGCCAGAAAGTGTTCATCTGTCCGATGTGCAGTAGAGAAGACTTCGCGACTAGCGCGCTATTGGAGTCGCACCTGGAGCTCATCCATCCCGACTTCCAGGCAAAATGCGACCCCTGTGATCTATCCTTCAGGAATCACCGAGTGCTGAATCTTCACCGGTTTATGGTCCATCTATCAGAGCACGCGATTTTCAACGCCAGCCGCAACTCCCGCAATTCCGTCGTCGGTTTCAACGATCTGACCTTCATCGACTTCTCCGCGGACAAGTTCCCGGCGATCGCGCGAGCCGTCTGCGAGCAGTCGCTTCATCGACCTGCTTCCGGAGAGGTGGCCAAGTTCCAGTGCTCCAAGTGTCTCAGAGCGTTCCCGTGCAGATTGGCATTGGAGGCACACGAGATCGACTGCGGCACGGCCAACTCCCAGGCCAGGGTGATCGACGACAGTCAATCGAGGAGAGACTACTTCTTCGCGGGCCTCGACCTACAGAACAAGGCGGCGATGACCGAGGCTAAAGAAGGCAAAGATTTGGCCGACATCCAGAGCATCATCTCGGTCACATCCGGACCGATTCTACAGAACTTCCCAAGATCCGACGCTAGCACGCCCGAAAGCAATATCAGGTTCAATGCAAGCGTCAGCTCGTCCGGCTCCTCCGGTATGTTCTGCTCGGAGTACCACGAGGAGGAAGCGCAAGACGCGTTCGCGGCCGAGTACAGAAAGATGAAGCTAAAGGGCGAGTTTCCGTGCCGACTTTGCAAGGCGATATACCCGAACTTGAGAGCGCTGAAGGGCCACAACAGGGCGCACATGAGCGTCGATGCCGAGATGCCTTATCCTTGCGTCATATGTCCTTTCAACGGCCCCGACAAGGCCTCGCTGGTGAAACACCTGAGATCCCACAACGGGGACAGACCGTTCGAGTGCGCATTGTGCCACTTCGCGTTCACGACAAAGGCGAACTGCGAGCGGCACGTGAGGAACAGGCACGGGAAGGTCACCAGGGACGACATCAAGAGCGTGATAATCTACCATCCCAGCGAGGACTCGACCGCGGACAAAGACGACGCGAGGAAGAGCCTGGTGTATACGAACGATGAGCTGCAACATCAGACGCAGATGCATTACCCGTCGGTGCCGGTGGAGAGCCGCGGTGAGGTCAGGATAATCGAAGAGGCGAAGCTGCACAACTCGTTGTCCCTGCACGCCGGCTACGAGAAGGCCGGAAGCTTTCCCAGGCTGGGACAGCAGGCGATCGCGTTAACGCGGAACGCGGATGAGAGGAAGTCCGGACACAGCAGGCAGCAGTACTACACGAAGCTCGACGAGGACCTGGAATCGAGGTTGTCAGAGGGCAGCGTATCTCTAGTCAGTGATACCAAATCCGATTCGCACCAAAGAATACAAGCTAGTCGGATAAACCGGAAGAGGCGTCCGTCGGTGTCGGAGACGGCCGGCGAGGACGGTCCTCTAGACCTGTCGATGGACGTTCTAGATCTCAGCAAGAAGCCGAGGCGCAACGAGGACGGAGACTGTTTGACCACGCAGGATCAATTCGGAAAGAAGCAGGAGGAGCTATTCAACACCGCGAAACAATTTTTACTCGCCGAGGCTCTGCTGCAGGCTAGCCAGGCTAGCCAAGCCAACGCGCACAACGTGTCGGTAAATGGAGTCAACCCGGACACCCCCCTCTACTACCGCACATACCCCGACGATCAAGGCCCAAGAATACTGCCGCCGTATTTCTTCGGACCGCACGTGTTCTGCCAGGACTTGGCGTTGAAAGAGAGGCTGCAGAAGGAGTTGGTCAGAGGCCTGCAGTTGACCAGCGGCGGGACTTTGGTGGAGCCATCAGTTGGGACTTCGGTGGAGCCATCGATCGGGACCAGCGGCTTCAACGCGTATCCTCAAGGCAGAGACATGATCTCGCAATCGGCGAACGATCAAAACGATTACTCGAAGCTAATCACCCCGAAAGTGTCGAGCAAGCCGCTGTCCAATAAGGACAAGCCCGACAACAAGCAAATACCGTCATCGAACTCTGTGAAGATGGTGATCAAGAACGGCGTGTTGATGCCGAAGCAGAAGCAGAGGCGGTACAGAACCGAGAGACCATTCGGTTGCGGACACTGCTCAGCGAGATTCACTTTGAGAAGCAACATGGAGAGACACGTCAAGCAACAGCATCCTCAGCACTGGAGACTGAAGACCAGAGGAGGGCACTCGACCAGAGGCAGACCGCCTTCCAGTCATCCCACATTGTTGCAGAATCTGAGGCAACCCGCATCTCAAGTGACGCAGTCATACCTGAATATCCTGCCTAAATCAGTGCCGAACGCAGAGTACACCGCGAAACACCCTATCTCTGACCAAGTGAAATACGCCATCCTGGCACAGCAGTTAAAGGCCAACAAGGTCGAGGAGAATGACACCGAGGAGGAACTCGTGATCGACGAAGAACCCCAAGAAAAGGAGCAGGAATCTCAGAAGGAGAAGTGCACTAGCTTGTTGAGGGGTCAGTTGGAGGGCTCAGAAGCCGCGAAAGAAACGAAAGATGACCACGAAGAGTGCGTGAAAGGTGAGTCGACCAACACAGAGTCGGCAAATAGCGACAACGCGAACGATGAATCGAAGATGTCGGACTTGGAACAGTCGATGGAAGCTAGCGAGCACGACGATGCTAAGACAACGATCAAAGCCGAATCGGTGGGTGATAAGGCGGAGAAGATTGAAGACGGAACGACAGACTTGGCCAGCGTATCGGAGCTGTTGGACAACGCCTCTCAGCAGTTCCAGCAATTTCAGCCGCAGTATATGAGCGACGAGGAGGGCTTGGTCGCGTCGAACAGCGACTGCAACAACTCCGGCAGCGACGAGAAGTCCGACTCCGTGAACTCGTTGAACTCCGTCAGTACTTCGTCAAAGAAAAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGTCCGCGTACTCCATGGCGCCGAACCGAGTGATTTGTCCATACTGCGAGCGGCCGTTCCCGTGGACATCTTCTTTGAGACGACACATCCTGACGCACACGGGCCAGAAACCCTTCCAATGCGTGCACTGTTCCCTGCTATTCACCACAAAGTCGAACTGCGACCGTCACCTGTTGAGGAAACACAAAACGAGCCCAAGCAAGATCCGCAGGAGTAGGAACTCCTCTTCGCCGGACAGCCAAGCGGTCGTCAGCAACAACAACTCGTTCTCCATGAGGAACGTACCTGAGCGACCCTACAAATGCAATCAGTGCCCTAGCTCGACCTTCTCCACCCTGGGCAACTTGAAGAAGCACCGCTCGACGAAGCACGCTCGCAAAACGAAGTCTAGATCCGACACTCCGTCCAGCGAGCCTCAGAACAGTCCTCAAGACTGCTCGAAGCAGAACGAACAGACGGATTACGACAGCCAATCGTCGAGCGTCTCTGAAGGCATGGAAACCACGTCCGTGTCCGGAGTGCCCAAGTCAAATTTGAACAACATGCGGCCCATGAACGACACGCCCAGATCTAGAAGAACTTCTCCGAGGTCGTCGCCTGGTCCAAGCGATGTACCCTTCAAGTGCCACCTGTGCGACTGCGGCTTCTCCGAACGCCAGGACTGTTTGGAACACATCAAGGTGAACCATGACAGAGAGTACGAGAAGCTGGTTGAGAAGGGAGCACTAGACATGGACATTGATACTGTCGAAGATCAGCAACAACCACCACAGCAAAATCACCCCAGCGACGGCGAAGAGAAGAGAGGCCGCTTCCCGGATTACAGCAATAGAAAGGTGGTATGCGCTTTCTGCATGAGACGGTTCTGGTCAGCGGAAGACCTGCGCCGGCACATGAGGACGCACACGGGCGAGAGGCCGTTCTCCTGCGACATCTGCTGCCGGAGGTTCACGCTGAAACACAGCATGCTGCGGCACCGGAAGAAGCACGAGTCGGTGGACTCCACCATGTACGTGGGGACTAGCGGCGACGAGGAGAACTCACCCACACAGCCACCCACCATTACGCCTAGGAGTCAGCAGCAGCAACCGCCGGTGCTGGTAGGAAACCCTACAATACAGGACCGAATGTCGTTGCCGACAGTGGCCCCCGTTGCCACTGGCGACGCGGCGCCCAGTGGACTCGTGCGGTTCAGCCCTTACGGGAACCTGCCATCCTTAACAGGGAAACTGAACACCACCCCACAAAACGCGAACCTGGATGCCAGCGAGAACACGGACAACGACCTGATCTCCAACCTCCTGGGCATCCGGGATAAGAACTTCATCGACCGAGTGCTTCAAGCGTCCGCAGATGACGCCGCCAAACTTCTCGGTGTGAAGCACAGCCATGAGTGA
Protein Sequence: MDIPVFEGLIIWNSLALGIGRSRRHSRVNCSLRRQFVELVTVKSGLNQANDTEAQVDAASPLSSVDLPECAHPCPACPTVLSSTHELTNHLRGHNSPRSTDCSGEEDYCCGVCSKVLSSASSLDRHVLVHSGERPFKCKSCDMAFTTNGNMNRHLKTAHGSSSPHSCTDSEGSSDSDNPSKRRHIEEYNNNEIGKKKMPSLKRKSPDLIDRKKKLQDVKRKCTDFIDRQDNSPDLKSKSPDFIDRQENMPNLKRKSPDSMDRQENAPSLKRKSPDFIEWQENVQKSPDFADWQENDSSLKQKSPDLVDHQENMQALKRKCPDYVNDSESLKRHKIMLNNVRMEIMVSPDDSQKVFICPMCSREDFATSALLESHLELIHPDFQAKCDPCDLSFRNHRVLNLHRFMVHLSEHAIFNASRNSRNSVVGFNDLTFIDFSADKFPAIARAVCEQSLHRPASGEVAKFQCSKCLRAFPCRLALEAHEIDCGTANSQARVIDDSQSRRDYFFAGLDLQNKAAMTEAKEGKDLADIQSIISVTSGPILQNFPRSDASTPESNIRFNASVSSSGSSGMFCSEYHEEEAQDAFAAEYRKMKLKGEFPCRLCKAIYPNLRALKGHNRAHMSVDAEMPYPCVICPFNGPDKASLVKHLRSHNGDRPFECALCHFAFTTKANCERHVRNRHGKVTRDDIKSVIIYHPSEDSTADKDDARKSLVYTNDELQHQTQMHYPSVPVESRGEVRIIEEAKLHNSLSLHAGYEKAGSFPRLGQQAIALTRNADERKSGHSRQQYYTKLDEDLESRLSEGSVSLVSDTKSDSHQRIQASRINRKRRPSVSETAGEDGPLDLSMDVLDLSKKPRRNEDGDCLTTQDQFGKKQEELFNTAKQFLLAEALLQASQASQANAHNVSVNGVNPDTPLYYRTYPDDQGPRILPPYFFGPHVFCQDLALKERLQKELVRGLQLTSGGTLVEPSVGTSVEPSIGTSGFNAYPQGRDMISQSANDQNDYSKLITPKVSSKPLSNKDKPDNKQIPSSNSVKMVIKNGVLMPKQKQRRYRTERPFGCGHCSARFTLRSNMERHVKQQHPQHWRLKTRGGHSTRGRPPSSHPTLLQNLRQPASQVTQSYLNILPKSVPNAEYTAKHPISDQVKYAILAQQLKANKVEENDTEEELVIDEEPQEKEQESQKEKCTSLLRGQLEGSEAAKETKDDHEECVKGESTNTESANSDNANDESKMSDLEQSMEASEHDDAKTTIKAESVGDKAEKIEDGTTDLASVSELLDNASQQFQQFQPQYMSDEEGLVASNSDCNNSGSDEKSDSVNSLNSVSTSSKKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPFQCVHCSLLFTTKSNCDRHLLRKHKTSPSKIRRSRNSSSPDSQAVVSNNNSFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKTKSRSDTPSSEPQNSPQDCSKQNEQTDYDSQSSSVSEGMETTSVSGVPKSNLNNMRPMNDTPRSRRTSPRSSPGPSDVPFKCHLCDCGFSERQDCLEHIKVNHDREYEKLVEKGALDMDIDTVEDQQQPPQQNHPSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESVDSTMYVGTSGDEENSPTQPPTITPRSQQQQPPVLVGNPTIQDRMSLPTVAPVATGDAAPSGLVRFSPYGNLPSLTGKLNTTPQNANLDASENTDNDLISNLLGIRDKNFIDRVLQASADDAAKLLGVKHSHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00183494;
90% Identity: iTF_00183494;
80% Identity: -