Basic Information

Insect: Atta texana
Gene Symbol: -
Assembly: GCA_004480015.1
Location: QEPB01028820.1:1-6329[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.27 34 5.7 7.5 2 23 262 284 261 284 0.97

2 18 0.034 4.2 8.5 2.2 1 23 333 355 333 355 0.97

3 18 1 1.3e+02 3.9 1.1 1 23 404 426 404 426 0.97

4 18 0.029 3.6 8.7 0.1 1 20 474 493 474 495 0.92

5 18 0.001 0.13 13.3 1.8 1 23 535 557 535 557 0.98

6 18 3.3e-05 0.0041 18.0 0.1 1 23 604 626 604 626 0.96

7 18 0.0032 0.39 11.8 0.1 1 23 632 654 632 654 0.97

8 18 1.8e-05 0.0022 18.9 0.2 1 23 697 720 697 720 0.96

9 18 0.0026 0.32 12.1 0.6 1 23 726 749 726 749 0.96

10 18 3.6e-05 0.0045 17.9 2.5 2 23 757 779 756 779 0.97

11 18 0.00013 0.017 16.1 0.0 1 23 787 809 787 809 0.93

12 18 0.13 16 6.7 0.1 1 20 869 888 869 888 0.96

13 18 0.13 16 6.7 0.4 2 23 908 929 907 929 0.96

14 18 1.6e-06 0.0002 22.1 1.0 1 23 942 964 942 964 0.98

15 18 0.00011 0.013 16.4 3.1 1 23 986 1009 986 1009 0.94

16 18 0.0018 0.23 12.5 1.3 2 23 1068 1090 1067 1090 0.95

17 18 0.00044 0.054 14.5 1.6 1 23 1108 1131 1108 1131 0.93

18 18 0.0043 0.54 11.3 0.3 2 23 1224 1246 1224 1246 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.27	34	5.7	7.5	2	23	262	284	261	284	0.97
2	18	0.034	4.2	8.5	2.2	1	23	333	355	333	355	0.97
3	18	1	1.3e+02	3.9	1.1	1	23	404	426	404	426	0.97
4	18	0.029	3.6	8.7	0.1	1	20	474	493	474	495	0.92
5	18	0.001	0.13	13.3	1.8	1	23	535	557	535	557	0.98
6	18	3.3e-05	0.0041	18.0	0.1	1	23	604	626	604	626	0.96
7	18	0.0032	0.39	11.8	0.1	1	23	632	654	632	654	0.97
8	18	1.8e-05	0.0022	18.9	0.2	1	23	697	720	697	720	0.96
9	18	0.0026	0.32	12.1	0.6	1	23	726	749	726	749	0.96
10	18	3.6e-05	0.0045	17.9	2.5	2	23	757	779	756	779	0.97
11	18	0.00013	0.017	16.1	0.0	1	23	787	809	787	809	0.93
12	18	0.13	16	6.7	0.1	1	20	869	888	869	888	0.96
13	18	0.13	16	6.7	0.4	2	23	908	929	907	929	0.96
14	18	1.6e-06	0.0002	22.1	1.0	1	23	942	964	942	964	0.98
15	18	0.00011	0.013	16.4	3.1	1	23	986	1009	986	1009	0.94
16	18	0.0018	0.23	12.5	1.3	2	23	1068	1090	1067	1090	0.95
17	18	0.00044	0.054	14.5	1.6	1	23	1108	1131	1108	1131	0.93
18	18	0.0043	0.54	11.3	0.3	2	23	1224	1246	1224	1246	0.96

Sequence Information

Coding Sequence: atttcaaCAACCGATAAGCTGTCCACATGGGTATGCACAAATTGTGTGAAAAACGTTAATCAATGGTATACCTACAAGGAATCGTGTTTGCGTTCCCAGGACAAACTACAAGAATGGCTGGCAAATCAATTGTCGAATCCTACGGTTATTAAGATCAAAAATGAACCAATGGACATAGATTACGAAAATAGTGTAGAAATTATCGAGGAGACTATCAATAATGTAGAAGTTATCAAGGAGACAGTCAATAATGAAGTAATCGAGAAAACCACCAATAATGTAGAAGTTGTTGAAAAGATCATCAATGATGTAGAAATTGTCGAGAAGACCATCAATAATGTAGAAATTATTGAGGAGACCTTCACTAACTTAGAACAACcaCATTTACCAGTGAAAAACAATGAATCTAGTAATGAAAAAGTACAAGATGTAGTAGATAACAGCGATGTTAATGATGCTGCGAATGATACTAACAAAGACCCCGAATCAATCTCGTCCGCaatggaaaagaaaattgataagGAAAACAATCAAGCGGATCAGCAAGATTCTATAATTCTGTGTTCCATTAAAAGCGAACCGCAAGATGAAGACGATACCGATGGTACCATAGAAATAGAATCGAATAGCAGTGAATTGAATGCCTTGGCAGTCGATGAGGCAGAGGACACTGTCATGGAGGCTGATTCCACGCAAAAGTCTAATGCGGCTGGCGCATCgcctaagaaaaaattcagacGCGGTCCTCATACTCACTTCAGAGGAACGCGTGTTTTTAAGCAGAAGTGCACACACTGCCAGATATTTTTGCATTCTAAATACTCGTACATGAAACACATGAAGAGATTTCACAGTAAAGAAAATGGCATTGGAAATTCAGAGATGCGGAACGATGACGAAGAGATGATAGAGGATCTAGAAGATGAATTGATCAGTATGGAGAAGGACTCGCCGCTAACGCAAGTTCAACAGGACATTATCAGTCAACTGAAAACTTTTTCTTGCTACTCTTGCGAGCAGACATTTAACGATCGACGTAGCACTCTTTCTCATATACGTCAACATATGCCGGATCTAAGACCATACACATGTATTGCTTGTTTGACAGAATTTCCAGATCGATCAATGTATCAGTTGCATTGCGGAGCTTCCTTCGAATGCGCCATGAAAATTGCCTTAGTTGTACCGAAACACGGTAGCGAGcgatattttacatgtaacaTGTGTTTGCGTTCAATGCAAGGTAGAAAGGAGTTACTCAGTCATTTGTCGAAGCATTCTGATAAGCAGTACGAGGAGATGATGTCATCGTCAACGCGAGCCCCGCCTAAACTGAAGCCAATGGCGCCATTGCCATCCTCGAAAAACAGCACTTTACATAAGAGCGGACCTTATAAGAATGGCGATCCAAAGCACAATCATGCCTGTGATCTATGTGGCATGATCTACCGATATCGACCCAATATGATCAAGCACAGAGAAATTTGTGCGCGATTGGACCCAGACAACAGAATATTATACAAGTGCGTACATTGTTACATGACGTTCCTTGTGTTTAAGAAATTCCATTATCATATTACAGCCGatcataagaaaaaagattttacttGTTCTGAGTGCTTTTCCAAATTCCGATCACCCAGCGATTTTGTAACTCATTACGAAACCCATCGCACGACAATACAAGATAACCAACAAGAGCAGTATGACAGTACCTCGCAAAATACAGTTCAAACGCCATTGAAGGAACGTAATGCTTATGAAACAAATGTCAAATCAAGAGTTAGTTCACGAATATCAAATCAGCAGTATCCTTGCCCTCTCTGTCCCGAGAAGTTCTCTACGAAGGTTGAACTGAACGAGCATCGGACTCTTCATCTTAAAATGAAGATCTATTCGTGCGCCATTTGTCGTAGCTTATTCAGCAGCGCCGGCTCCTTGGAGATCCATATGAAGGATCATGGTATCGAAGACGCACACGAAAGGGACGCCAATGTCTCGTGCGTGGAATTCGGCAGCTTAGATGAGGATGTGAGGATTGAGAAAGATTTGGTGAATATCAGTAGCATCTCGGATCCTGGTCAAAATCATGAATGTGGCGAATGTGGTAAGGTACTATCTAGTTACGCTAATCTTCGACGACACGCTAAAATCGCTCATCGAAACACTAAGATCTATGATTGTGTCGATTGCTCGCGAATGTTTATGCGTAAAGATTTGTACGATACTCATATGGAGATCAAGCACAATTCTAAGAACACAATGTTGCAGTGTCCGCAATGCCCCAAGAGTTTTGTCTTCCATTCGAATTTCACTTATCACTTTCGTACTGCTCATCTTCAGAAATCACAAACCGGTTATGCCTGCGATATCTGCGGCAAAGTCTTTGTTGAGGAAGCgtctttaaaaatacataggGGCTGGCACAATCGCGCCAATTCACGTTTGAGCACTCGATTTATACTGGGAGATCAAAATACATCTAATAACGCACAAAAGGAATCAAGTAGCGTTGAATCTGTTGAGAATTCAGAACGGCCGGCGAGAGCACGAAAATCCTTCCCTAATCCACCACTTCAATCACTAACAAAGACATCAGGGAATTACCAATGTCAAGTATGCAATGACAAATTTAATGATGTCATAGAACTAAGGACCCATTTGTGGGACGTCCACTGCGCTCGCAACAAACCAGAGAAGAGTTTCTCTAATGATGAGCTTCAATGCGAACTCTGCACGAACATTTTCCCCGATAAGGGAACTCTAGCATGTCATATGCAATGGCACAAGGCTAATCCTATTCTCAGTGACATACAAAAAACGTTTTCCTGCGATATATGCGGCAGGTCTTACAGTTCGAAGAAGGCTCTATGGAAACACAAGAGACTTCACAAAGCTACCGCTGTAGCATCAATTAAATTCCAATCTTTGGCTAGAAAACCGATGGCTACACAATTCCTGTGCAACTTCTGTCGCAAAGTCTTTTCAAGCAATCAATCTTTGCAACGACACAAACTCACTTTCCACAGTGATCCGTTGAATCAACAACGTGCGCAGCAACATTTGTACAACAGCAGTCAATTATCATCATTTGATGAACCAAGAACAAAGCGCATGAAACCagacattgaaaatgataattcgCAGACCAAATTGTCGCCTTTCGCCATGGACTTCGCTGGCGAGAGAAGGAAACCGGTTATGTGCCATGTTTGCAAGAAAATGTTCCCTAACATGAGCGTGCTGTACAAGCATAAGCAAATGGTTCACAAACGACCAAGAATACCCGAGTGTATACCAATGTCGACTCAGGATGGCAAATTTTCATGCAACATCTGCTTTAAGAAATTCCCCGGTCTATCAAATCTGCGAcaacattttacaattaaacacAAGAAGACATCCGAAGCCAGCAACGCATCAATGGCAGTGAGCAATGAGAGATTGTCGCTCCCGACATCCGAACGTCCAAAGGAGGGAACCTATGAAGTGGCCTACAATAACGTGATGTACAGCTGTAAATTGTGCAAGCAGTGTCACGTCTTCAATAAGGATTCTATCATAAGACATATCACCAATGTGCACAACGCAGTGTATCAGGCCGATAGTAAGACGTTCCATAGAGAAATCACTCTGAGCACTTACGTAGTAAAGGATGCGATCGGACCTACTTGTCCGCGATGCGATGTTAAATATCCTAATAATAGGGCTCTGAAGATACACTACATTAAGTTCcacgaaaataatgattaa
Protein Sequence: ISTTDKLSTWVCTNCVKNVNQWYTYKESCLRSQDKLQEWLANQLSNPTVIKIKNEPMDIDYENSVEIIEETINNVEVIKETVNNEVIEKTTNNVEVVEKIINDVEIVEKTINNVEIIEETFTNLEQPHLPVKNNESSNEKVQDVVDNSDVNDAANDTNKDPESISSAMEKKIDKENNQADQQDSIILCSIKSEPQDEDDTDGTIEIESNSSELNALAVDEAEDTVMEADSTQKSNAAGASPKKKFRRGPHTHFRGTRVFKQKCTHCQIFLHSKYSYMKHMKRFHSKENGIGNSEMRNDDEEMIEDLEDELISMEKDSPLTQVQQDIISQLKTFSCYSCEQTFNDRRSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYQLHCGASFECAMKIALVVPKHGSERYFTCNMCLRSMQGRKELLSHLSKHSDKQYEEMMSSSTRAPPKLKPMAPLPSSKNSTLHKSGPYKNGDPKHNHACDLCGMIYRYRPNMIKHREICARLDPDNRILYKCVHCYMTFLVFKKFHYHITADHKKKDFTCSECFSKFRSPSDFVTHYETHRTTIQDNQQEQYDSTSQNTVQTPLKERNAYETNVKSRVSSRISNQQYPCPLCPEKFSTKVELNEHRTLHLKMKIYSCAICRSLFSSAGSLEIHMKDHGIEDAHERDANVSCVEFGSLDEDVRIEKDLVNISSISDPGQNHECGECGKVLSSYANLRRHAKIAHRNTKIYDCVDCSRMFMRKDLYDTHMEIKHNSKNTMLQCPQCPKSFVFHSNFTYHFRTAHLQKSQTGYACDICGKVFVEEASLKIHRGWHNRANSRLSTRFILGDQNTSNNAQKESSSVESVENSERPARARKSFPNPPLQSLTKTSGNYQCQVCNDKFNDVIELRTHLWDVHCARNKPEKSFSNDELQCELCTNIFPDKGTLACHMQWHKANPILSDIQKTFSCDICGRSYSSKKALWKHKRLHKATAVASIKFQSLARKPMATQFLCNFCRKVFSSNQSLQRHKLTFHSDPLNQQRAQQHLYNSSQLSSFDEPRTKRMKPDIENDNSQTKLSPFAMDFAGERRKPVMCHVCKKMFPNMSVLYKHKQMVHKRPRIPECIPMSTQDGKFSCNICFKKFPGLSNLRQHFTIKHKKTSEASNASMAVSNERLSLPTSERPKEGTYEVAYNNVMYSCKLCKQCHVFNKDSIIRHITNVHNAVYQADSKTFHREITLSTYVVKDAIGPTCPRCDVKYPNNRALKIHYIKFHENND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00182140;
90% Identity: iTF_00016844;
80% Identity: -