Atex021506.1
Basic Information
- Insect
- Atta texana
- Gene Symbol
- -
- Assembly
- GCA_004480015.1
- Location
- QEPB01039261.1:8583-10862[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.011 1.4 10.0 0.7 1 23 11 33 11 33 0.97 2 12 8.9e-06 0.0011 19.8 3.9 1 23 39 61 39 61 0.96 3 12 9.2e-05 0.011 16.6 0.3 1 23 67 89 67 89 0.95 4 12 2e-06 0.00025 21.8 2.5 1 23 95 117 95 117 0.99 5 12 5.1e-05 0.0064 17.4 0.4 1 23 123 146 123 146 0.91 6 12 0.00093 0.12 13.4 3.9 2 23 296 317 295 317 0.97 7 12 0.00014 0.018 16.0 2.8 1 23 323 346 323 346 0.96 8 12 1.4e-05 0.0017 19.2 0.7 1 23 352 374 352 374 0.98 9 12 1.5e-06 0.00019 22.2 2.7 1 23 380 402 380 402 0.98 10 12 0.17 22 6.3 2.4 1 23 408 430 408 430 0.87 11 12 4e-06 0.00049 20.9 1.0 1 23 436 458 436 458 0.98 12 12 4.3e-05 0.0053 17.6 0.7 1 21 464 484 464 485 0.95
Sequence Information
- Coding Sequence
- ATGCGCGACGTCCACGACGGCGTTAAAAATTTCGCTTGCGATATTTGCGGCCGTCATCTTGCCTCGAGAGCATCGAGGGACGAGCACAAGCGCACTCACTCCGATGAGAGGCCTCACGTGTGCGAGACTTGCGGCAAATCCTTCAAGCAGAAGGCGTCCCTGCATGTGCACCGACTCTACCATTCAAAGATCCTGCCATATCGTTGCGTTCTGTGCGACCGCGGTTTCAGAAGAAAACAAGAATTGGACAAGCACGCGATCTGGCACTCTGGTCGAAAGCCGTATGTCTGCGATATCTGTGACGAACGTTTCCGCAGCAAAGGTTGCATCACCCGTCATCAACGCACTCATACCAATCAACGCTTGTATGTTTGCGTAATCTGCGGCGCCAAATTTACTCAGGAGCGATATCTGAAGAGACACTATGGCAATTTACATACGGCTGTACGCACattaaaaaatgaagtcaCACACGAGCGAAAAATCGTCCACAGTTATTGCCAACGAGTGTATAAGAAGGGAGaacggaaaaataaaatcaatccaATCCAAACTAAAACGTCCAATGTAATCGatgaaaattcagaaaatattttttttcctgcaGATAATATCGATAACGATACATTAACTAAATGTTCGTCTTCCACAAATACATCATCTACAATGTCCTTCTCCTTGACAAATGACAATAAGAAGAAGAGTATAGAAGATGAAGGTTCTAATTCTACTAGTCAGATGCGAACAAATTGCACGAAAGGAACAACATCAAACGAGGTTACGCGACAAAATCTTATAGCGGAAGTAAAAGAGTCTAATGAATATCTAGagaaaaatgtcaaacaatcCAAATCCAAAAAAGTTGTGTGCACCAGTCCGTCGATAGTTTGCAAATTTTGTAACAAGAAATTCCGTTCGCGCAAAAATCACTGGGCTCACGTACGCACACACTCGAGTGAGAAATCATACACGTGCCACATCTGTGGGAAGCAATTTGTTCAGGGTGGTAGTCTATATTATCATCTGAAACACGTGCATGACGGCGTGAAGAATCACACCTGTGATATATGTGGTCGCAGCTTTGCCATGAAGACTGCCATGGAAGACCACCGACGTATCCATACTGGTGAACGCCCGTATGTGTGCCACACGTGTGGCAAGACGTTCAAAACCAAAGCATCCCTCTATATACACAGTAAGATCCATACAGACGAATTCCCGCACAAGTGTACTTATTGCGCGAAAAAGTTCCGTTGGAGACAACAAATGTTGGGTCATTTGACAGTACATACaggtgaaaaaaatcatacatgcGACGTATGCGGTAAGGGTTTTGGCGTAAAGAACGACCTAACCAGACACAAACGCGTCCATTCCGAAGACAAACCGTATACGTGTCAAAAATGCGGTATCAGTTTCGGTCAGAAACGTTATCTCAAAAGTCATGAACGCTTAAAGTTAGGGACGTGCGGGTACTCGCAAAGTGAACTCCGAGACTTGTGTAAAAATCGTATCGAGTTTGATTAG
- Protein Sequence
- MRDVHDGVKNFACDICGRHLASRASRDEHKRTHSDERPHVCETCGKSFKQKASLHVHRLYHSKILPYRCVLCDRGFRRKQELDKHAIWHSGRKPYVCDICDERFRSKGCITRHQRTHTNQRLYVCVICGAKFTQERYLKRHYGNLHTAVRTLKNEVTHERKIVHSYCQRVYKKGERKNKINPIQTKTSNVIDENSENIFFPADNIDNDTLTKCSSSTNTSSTMSFSLTNDNKKKSIEDEGSNSTSQMRTNCTKGTTSNEVTRQNLIAEVKESNEYLEKNVKQSKSKKVVCTSPSIVCKFCNKKFRSRKNHWAHVRTHSSEKSYTCHICGKQFVQGGSLYYHLKHVHDGVKNHTCDICGRSFAMKTAMEDHRRIHTGERPYVCHTCGKTFKTKASLYIHSKIHTDEFPHKCTYCAKKFRWRQQMLGHLTVHTGEKNHTCDVCGKGFGVKNDLTRHKRVHSEDKPYTCQKCGISFGQKRYLKSHERLKLGTCGYSQSELRDLCKNRIEFD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00182125;
- 90% Identity
- iTF_00182125;
- 80% Identity
- -