Basic Information

Insect: Atta colombica
Gene Symbol: -
Assembly: GCA_001594045.1
Location: NW:1584844-1587677[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.2e-06 0.00023 20.7 2.0 1 23 77 99 77 99 0.98

2 14 1.6e-07 8.7e-06 25.1 0.3 1 23 105 128 105 128 0.95

3 14 0.0066 0.35 10.6 0.7 1 23 134 156 134 156 0.97

4 14 1e-05 0.00055 19.4 3.9 1 23 162 184 162 184 0.96

5 14 0.00011 0.0057 16.2 0.3 1 23 190 212 190 212 0.95

6 14 4.7e-06 0.00025 20.5 4.6 1 23 218 240 218 240 0.99

7 14 6e-05 0.0032 17.0 0.4 1 23 246 269 246 269 0.91

8 14 0.0011 0.057 13.1 3.9 2 23 419 440 418 440 0.97

9 14 0.00017 0.0089 15.6 2.8 1 23 446 469 446 469 0.96

10 14 1.6e-05 0.00086 18.8 0.7 1 23 475 497 475 497 0.98

11 14 1.8e-06 9.4e-05 21.9 2.7 1 23 503 525 503 525 0.98

12 14 0.2 11 5.9 2.4 1 23 531 553 531 553 0.87

13 14 1.4e-06 7.4e-05 22.2 1.5 1 23 559 581 559 581 0.98

14 14 5e-05 0.0027 17.3 0.7 1 21 587 607 587 608 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.2e-06	0.00023	20.7	2.0	1	23	77	99	77	99	0.98
2	14	1.6e-07	8.7e-06	25.1	0.3	1	23	105	128	105	128	0.95
3	14	0.0066	0.35	10.6	0.7	1	23	134	156	134	156	0.97
4	14	1e-05	0.00055	19.4	3.9	1	23	162	184	162	184	0.96
5	14	0.00011	0.0057	16.2	0.3	1	23	190	212	190	212	0.95
6	14	4.7e-06	0.00025	20.5	4.6	1	23	218	240	218	240	0.99
7	14	6e-05	0.0032	17.0	0.4	1	23	246	269	246	269	0.91
8	14	0.0011	0.057	13.1	3.9	2	23	419	440	418	440	0.97
9	14	0.00017	0.0089	15.6	2.8	1	23	446	469	446	469	0.96
10	14	1.6e-05	0.00086	18.8	0.7	1	23	475	497	475	497	0.98
11	14	1.8e-06	9.4e-05	21.9	2.7	1	23	503	525	503	525	0.98
12	14	0.2	11	5.9	2.4	1	23	531	553	531	553	0.87
13	14	1.4e-06	7.4e-05	22.2	1.5	1	23	559	581	559	581	0.98
14	14	5e-05	0.0027	17.3	0.7	1	21	587	607	587	608	0.95

Sequence Information

Coding Sequence: ATGGTATCTAGCAAGAAATGTCTGTCATCGACGCATCTTAGCGATTTTGACGAGAAATTGGAAAAATACAATTCGGCAAATTCTCCGAACAACTCTGAACAAACGCAGAAATCTCAAGAGAAACATATGATTAATTCTCAAGAATGTACAAAACgatcaaaacaattattaaaacaacacGTCAAATTAACTCGCTCGAAAACGACAAAGGGTGACGGAAGTGCCTCTCACAAGTGTGAAGAATGCGGAAAAGTTCTTTCTACATCGTATAATCTGCTAATTCATCATAACATTCACGCTGGCGTACGGCCGTACATTTGTTCCATTTGCAACAAGAGTTTTCGATCAGCGTCTGGTCTGAACAGACACGTGCGCGACGTCCATGACGGCGTTAAAAATTTCGCCTGCGATATTTGCGGTCGTCATCTTGCCTCGAGAGCATCGAGGGACGAGCACAGGCGCACTCACTCCGGTGAGAGGCCTCACGTATGCGAGACTTGTGGCAAATCCTTCAAGCAGAAGGCGTCCCTGCATGTGCACCGACTCTACCATTCAAAGATCCTGCCATATCGTTGCGTTCTGTGCGACCGCGGTTTCAGAAGAAAACAAGAATTGGACAAACACGCGATCTGGCACTCTGGTCGAAAGCCGTATGTCTGCGATATCTGTGACGAATGTTTCCGCAGCAAAGGTTGCATCACCCGTCATCAACGCACTCATACCAATCAACGCTTGTATGTTTGCGTAATCTGCGGCGCCAAATTTACTCAGGAGCGATATCTGAAGAGACACTATGGCAATTTACATACGGCTGTACGCACattaaaaaatgaagtcACACACGAGAGAAAAATCATCTATAGTTATTGCCAACGAGTGTATAAGAAGGGAGAACggagaaataaaatcaatccaATCCAAACTAAAACGTCCAATGTAATCgatgaaaattcaaaaaatattttttttcctgcaGATAATATCGATAACGATACATCAACTAAATGTTCGTCTTCCACAAATACATCATCTACAATGTCCTTCTCCTTGACAAATGACAATAAGAAGAAGAGTACAGAAGATGAAGGTTCTAATTCTACTAATCAGATGCGAACAAATTGCACGAAAGGAACAACATCAAACGAGGCTACGCGACAGAATCTTATAGCGGAAATAAAGGAGTCCAATGAATATCTAGagaaaaatgtcaaacaattcAAATCCAAAAAAGTTGTGTGCACCAGTCCGTCGATAGTTTGCAAATTTTGTAACAAGAAGTTCCGTTCACGCAAAAATCACTGGGCTCACGTACGCACACACTCGAGTGAGAAATCATACACATGCCACATCTGTGGGAAGCAATTTGTTCAGGGTGGTAGTCTATATTATCATCTGAAACACGTGCATGACGGCGTGAAGAATCACACCTGTGATATATGTGGTCGCAGCTTTGCCATGAAGACTGCCATGGAAGACCACCGACGTATCCATACTGGTGAACGCCCGTATGTGTGCCACACGTGTGGCAAGACGTTCAAAACCAAAGCATCTCTCTATATACACAGTAAGATCCATACAGACGAGTTCCCGCACAAGTGTACTTATTGCGCGAAAAAGTTCCGTTGGAGACAACAAATGTTGGGTCATCTGACAGTACATACaggtgaaaaaaatcatacgtGCGACGTATGCGGTAAGAGTTTTGGCGTAAAGAACGACCTAACCAGACACAAACGCGTCCATTCCGAAGACAAACCGTATACGTGTCAAAAATGCGGTATCAGTTTCGGTCAGAAACGTTATCTCAAAAGTCATGAACGCTTAAAGTTAGGGACGTGCGGGTACTCGCAAAGTGAACTCCgagatttatgtaaaaatcgtATCGAGTTTGATTAG
Protein Sequence: MVSSKKCLSSTHLSDFDEKLEKYNSANSPNNSEQTQKSQEKHMINSQECTKRSKQLLKQHVKLTRSKTTKGDGSASHKCEECGKVLSTSYNLLIHHNIHAGVRPYICSICNKSFRSASGLNRHVRDVHDGVKNFACDICGRHLASRASRDEHRRTHSGERPHVCETCGKSFKQKASLHVHRLYHSKILPYRCVLCDRGFRRKQELDKHAIWHSGRKPYVCDICDECFRSKGCITRHQRTHTNQRLYVCVICGAKFTQERYLKRHYGNLHTAVRTLKNEVTHERKIIYSYCQRVYKKGERRNKINPIQTKTSNVIDENSKNIFFPADNIDNDTSTKCSSSTNTSSTMSFSLTNDNKKKSTEDEGSNSTNQMRTNCTKGTTSNEATRQNLIAEIKESNEYLEKNVKQFKSKKVVCTSPSIVCKFCNKKFRSRKNHWAHVRTHSSEKSYTCHICGKQFVQGGSLYYHLKHVHDGVKNHTCDICGRSFAMKTAMEDHRRIHTGERPYVCHTCGKTFKTKASLYIHSKIHTDEFPHKCTYCAKKFRWRQQMLGHLTVHTGEKNHTCDVCGKSFGVKNDLTRHKRVHSEDKPYTCQKCGISFGQKRYLKSHERLKLGTCGYSQSELRDLCKNRIEFD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00182776;
90% Identity: iTF_00182776;
80% Identity: -