Basic Information

Insect: Atta texana
Gene Symbol: ZNF236
Assembly: GCA_004480015.1
Location: QEPB01000435.1:1-5497[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 6.7e-05 0.0084 17.0 2.7 1 23 6 28 6 28 0.98

2 15 0.0043 0.53 11.3 6.0 1 23 83 105 83 105 0.97

3 15 2e-05 0.0025 18.6 4.9 1 23 111 133 111 133 0.99

4 15 3.2e-06 0.00039 21.2 1.7 1 23 139 161 139 161 0.98

5 15 0.00028 0.035 15.1 8.7 1 23 167 189 167 189 0.98

6 15 0.94 1.2e+02 4.0 1.3 2 23 537 558 536 558 0.87

7 15 0.0001 0.013 16.5 3.7 1 23 564 586 564 586 0.99

8 15 0.16 20 6.4 0.7 2 23 593 614 592 614 0.96

9 15 1.8e-08 2.3e-06 28.2 1.4 2 23 689 710 688 710 0.98

10 15 5.8e-05 0.0072 17.2 5.0 1 23 716 738 716 738 0.99

11 15 0.0017 0.21 12.6 3.9 1 23 744 766 744 766 0.97

12 15 0.00022 0.027 15.4 3.1 1 23 772 794 772 794 0.99

13 15 2e-06 0.00025 21.8 0.6 2 23 1029 1050 1028 1050 0.97

14 15 0.00022 0.027 15.4 6.4 1 23 1056 1078 1056 1078 0.98

15 15 0.00027 0.033 15.1 7.8 1 23 1084 1107 1084 1107 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	6.7e-05	0.0084	17.0	2.7	1	23	6	28	6	28	0.98
2	15	0.0043	0.53	11.3	6.0	1	23	83	105	83	105	0.97
3	15	2e-05	0.0025	18.6	4.9	1	23	111	133	111	133	0.99
4	15	3.2e-06	0.00039	21.2	1.7	1	23	139	161	139	161	0.98
5	15	0.00028	0.035	15.1	8.7	1	23	167	189	167	189	0.98
6	15	0.94	1.2e+02	4.0	1.3	2	23	537	558	536	558	0.87
7	15	0.0001	0.013	16.5	3.7	1	23	564	586	564	586	0.99
8	15	0.16	20	6.4	0.7	2	23	593	614	592	614	0.96
9	15	1.8e-08	2.3e-06	28.2	1.4	2	23	689	710	688	710	0.98
10	15	5.8e-05	0.0072	17.2	5.0	1	23	716	738	716	738	0.99
11	15	0.0017	0.21	12.6	3.9	1	23	744	766	744	766	0.97
12	15	0.00022	0.027	15.4	3.1	1	23	772	794	772	794	0.99
13	15	2e-06	0.00025	21.8	0.6	2	23	1029	1050	1028	1050	0.97
14	15	0.00022	0.027	15.4	6.4	1	23	1056	1078	1056	1078	0.98
15	15	0.00027	0.033	15.1	7.8	1	23	1084	1107	1084	1107	0.98

Sequence Information

Coding Sequence: TTACACACGAAACCGCACAAGTGCAATATATGCGATAAATCATTTAGCGCAAGTACCATCCTAAAAAATCACATGAAGAGCCACACGCGGGAGAAGCCCAAAATATCGCCGGAGGCGGAAAGTTTGGTGCCACAAGTGGTATTGCAAGAACCACTTGTCATTAGCGACGCTGGTAATAAAATCAGCGTGGCACAGGTGCAGTCAAAACAGAAACAATTATACGAAAATGTCGGCGTAACCAGGCCGCATGAATGTTGGGTTTGTCACGCAGCGTTCAGGAAAGTTAGTCACTTGAAGCAACATTTTCGCAGGCATACGGGCGAACGTCCTTACAAGTGTTCCAAGTGCGACAGGAGATTCACATCAAATAGTGTTCTGAAATCTCATTTACATACGCACGACGATACGAGGCCTTACAGTTGTTCTGTATGCGACACGAAATTCTCTACGCAGAGCAGCATGAAGAGACATTTAGTGACACATAGCAATAAAAGGCCATACATGTGTCCATACTGTCACAAAACGTTTAAGACATATGTCAATTGCCGAAAGCACATGAAGAGGCACAAACATGAGTTAGCACAACGGCAATTGGAAGAACAAAAGATGCAAGCTCAAAAGGATTCACAGCCTTCGAGCGAAGCTAAGGAAGCTACATCATCATTACCGGAGAGCATCACTCTCACCGAAGATATGTCTTTTCAACCGCAAATGGCACCAGATTTTACGCAGGCTTTCTCTGATCAGTTTCAAAATATCAACacggagaaagaaaaatcctTTTTACTATCAGACAATACAACGCCATCGATAGTGAATCaaaatttatctGTTGACACTAATTTAGGAACGTCGCAAACTTTACACGCTGATGAAACTGGTACTATCACGTTACCTAATTACTCAGGAGATCAAACTTTCACGCCGGAAAGTATACGAGAAATAGAAGAGACTTTAAATCAGCAGTTATTCAACATGGGCATGAATCTCGAACTGGGAACAAACAATTTGCCGAGGCAGATAGACGAAGCAAACACAAATTCTAGAGAACAGCCGGtgctcaatattatatatgaacataACAAATCTCTGGAATCGTCAGGCAATACCATATTCATGTCGCAATTTGATTCATTTGATATGAACCAAATAACATTGCAGaCGGATAACGATATAGACATTGGTTTAAATCCGAGCAATTCTATGAGTATGTCCAGTATTTTGCCCAGATCCGTGGGAAATCAACAAGAGAAACAACAAGCTATTCCAGTTACTACAGCTAGCAATATAGATACCTCTCAAATTACGAGAAATACTCATCTAGTGGTAATAAATCCTAAGGAAAATTGTCCGGAATTAATGAGACTTTCGCAAGTATGCCCATCAAAGTACCCAAAAGTCATCGCGAAAGCAGATATCACAAATGGATCGGAGATGCAAGGCATGAATGGGCATGAAAAGgcatcacaaaaaaataatactaagtcgtgtgaaaatgaaagaaattcttttatGAAGAATTTTCAAAGTACAATGCCTTCGAAAACGCTTGCTTCATCTGGCATAACGGATAACTCAGCCAAAATATCGCAGTGTAACACTCTGTTGCAATGTCATGTGTGTGGTGATCAAGGTTTCACGACAGAGAGattgaaaGAACATTTGAAATCTCATCGCGGTGACAAAGAGTATGAATGTTCCGAGTGTTCCCAGCGATTCTGCACGAACCGCGGTCTCAGTAAGCACCTGAAGATGCACATGAACAAGCAgCGATGGAAATGCATGATATGTCAGAAAGTACTGGACAGCAAACTGCAAATGAAATATCACAGCAAAATACACACCGCAACTTGGAATGTTTCATCCATGGAACCAGACAGCTCTCAGAAGAATGTTATTTCCTCGAGTTCCGGTTTACTATCCGATCTAACAACGCTGGATGTTCGAGCAGATTCAAACTCGTCAGTTTCCGAGAAAGTTTTGATGGCCGCAGTCGCCGAGAAAAAAAGCATGGATCACGCTGATGAAAATATAGTGAAGAAAGAGATAAGGGAATACACTAATAAATGCAAGTACTGTCCGAAAACTTTCCGTAAACCAAGCGATCTCATCAGGCACATTCGCACGCATACGGGTGAACGACCTTACAAGTGTGATCACTGCAACAAAAGCTTCGCGGTCAAGTGTACTTTGGACTCACACATGAAGGTTCACACGGGCAAGAAGACATTTTGCTGCCACGTCTGCAGCAGCTTGTTCGCTACAAAGGGCAGTTTGAAAGTTCACATGCGATTGCATACAGGTTCGAAACCATATAAATGTCTTGTGTGCGATCTTCGCTTTCGTACTTCGGGTCACAAGAAGGTACATATGTTGAAACATGCAAGAGAGCATAAGGGTGGCGCAAAACGCAAGCCGAAAAACTCCAAGGTCGCTGCGGTGGCAGAAGCGGCGGCCAGCCTTGAAAAACTCGGCAATAGTTCTCTTGATAATGCGTCAACAACAATGACTACTACCATAATCAGCGATGAAGCCGCGCCGTCGCAGAATCTGAATTATCCCACTTTAGAGCAAACAGTAAATCTCGGTACCGCGGTTCATCTGCCGAATCAAATCGCGTTTAATCATACCGACACTACGACAATCCTCAATAACAATTCCATACTTTCTGTGAACGAAAACAACGAACTAGTTGCGAATCTGCAGTTCTTGTTGGCAAATGGTCTCGTAACTTTTCAAACGGACGATACTCTGCTGACGCAATCAACGACAAACAGTTCCGATGCTACCGGCGCCGGAATGCCAACTAACATGATCGAGTTAGTTAATCCGGATCCTTTTCAGGAAGCTTGCAACTTGGGTAACGCCAATCACGTAGTGATAACCAGTCAGGTGTCAGCGGAGACAACGACTGCGGATACGAGCAACACGGCAGTTATTCAGATGAACAATTGTATGCCTCCTATGCCTATGGTACAAATTCAGACTCGAGATACAAATAGCGTCGGTATGTTTGAAGCGAAAACGAGTAATCAAACGACGACAGTAACTATGGCGAAAGCTTCGGCGCAGCCTTCAAGCAAGGAGTGCGACGTATGCGGAAAAACGTTCATGAAGCCGTATCAACTGGAACGACACAAACGCATTCATACAGGCGAAAAACCGTTCAAGTGCGAACAGTGCGACAAGTCGTTTGCGCAAAAATTTACGCTGCATCTACATCAGCAGCACCACACCGGTGATCGGCCGTACTCTTGTCCGCACTGCAAGCGCCTTTTCACGCAGAAATGCAACTTACAGACACATCTGAAACGCTTCCATCAGACGGTCATGCTTGATGTTAAAAAGCTGAAGAGTGGCCAGCAGATGCTGGGCACACTTCTACAAGACAATCAAGGCGGCACTACCAAGCTGCTAAATCTAGACGACATACTGGTGGTAgattttctcaaataa
Protein Sequence: LHTKPHKCNICDKSFSASTILKNHMKSHTREKPKISPEAESLVPQVVLQEPLVISDAGNKISVAQVQSKQKQLYENVGVTRPHECWVCHAAFRKVSHLKQHFRRHTGERPYKCSKCDRRFTSNSVLKSHLHTHDDTRPYSCSVCDTKFSTQSSMKRHLVTHSNKRPYMCPYCHKTFKTYVNCRKHMKRHKHELAQRQLEEQKMQAQKDSQPSSEAKEATSSLPESITLTEDMSFQPQMAPDFTQAFSDQFQNINTEKEKSFLLSDNTTPSIVNQNLSVDTNLGTSQTLHADETGTITLPNYSGDQTFTPESIREIEETLNQQLFNMGMNLELGTNNLPRQIDEANTNSREQPVLNIIYEHNKSLESSGNTIFMSQFDSFDMNQITLQTDNDIDIGLNPSNSMSMSSILPRSVGNQQEKQQAIPVTTASNIDTSQITRNTHLVVINPKENCPELMRLSQVCPSKYPKVIAKADITNGSEMQGMNGHEKASQKNNTKSCENERNSFMKNFQSTMPSKTLASSGITDNSAKISQCNTLLQCHVCGDQGFTTERLKEHLKSHRGDKEYECSECSQRFCTNRGLSKHLKMHMNKQRWKCMICQKVLDSKLQMKYHSKIHTATWNVSSMEPDSSQKNVISSSSGLLSDLTTLDVRADSNSSVSEKVLMAAVAEKKSMDHADENIVKKEIREYTNKCKYCPKTFRKPSDLIRHIRTHTGERPYKCDHCNKSFAVKCTLDSHMKVHTGKKTFCCHVCSSLFATKGSLKVHMRLHTGSKPYKCLVCDLRFRTSGHKKVHMLKHAREHKGGAKRKPKNSKVAAVAEAAASLEKLGNSSLDNASTTMTTTIISDEAAPSQNLNYPTLEQTVNLGTAVHLPNQIAFNHTDTTTILNNNSILSVNENNELVANLQFLLANGLVTFQTDDTLLTQSTTNSSDATGAGMPTNMIELVNPDPFQEACNLGNANHVVITSQVSAETTTADTSNTAVIQMNNCMPPMPMVQIQTRDTNSVGMFEAKTSNQTTTVTMAKASAQPSSKECDVCGKTFMKPYQLERHKRIHTGEKPFKCEQCDKSFAQKFTLHLHQQHHTGDRPYSCPHCKRLFTQKCNLQTHLKRFHQTVMLDVKKLKSGQQMLGTLLQDNQGGTTKLLNLDDILVVDFLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00127676;
90% Identity: -
80% Identity: -