Basic Information

Insect: Atta colombica
Gene Symbol: -
Assembly: GCA_001594045.1
Location: NW:2623241-2626714[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0031 0.17 11.6 0.4 1 23 120 143 120 143 0.90

2 13 0.0058 0.31 10.8 4.7 2 23 265 287 265 287 0.91

3 13 1 54 3.7 1.5 8 23 333 349 332 349 0.94

4 13 4.6 2.5e+02 1.7 7.6 3 23 438 459 437 459 0.95

5 13 4.5 2.4e+02 1.7 2.1 1 23 509 532 509 532 0.93

6 13 0.012 0.66 9.8 0.4 2 23 580 602 579 602 0.94

7 13 0.00041 0.022 14.4 0.1 3 23 625 646 624 646 0.96

8 13 0.006 0.32 10.7 3.6 2 23 698 720 697 720 0.96

9 13 0.082 4.3 7.2 4.2 3 23 735 756 733 756 0.92

10 13 0.00021 0.011 15.3 0.1 2 23 804 826 804 826 0.94

11 13 0.1 5.4 6.9 0.5 1 23 905 927 905 927 0.98

12 13 0.013 0.71 9.7 2.4 2 23 944 966 943 966 0.93

13 13 0.0053 0.28 10.9 0.8 1 23 1039 1062 1039 1062 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0031	0.17	11.6	0.4	1	23	120	143	120	143	0.90
2	13	0.0058	0.31	10.8	4.7	2	23	265	287	265	287	0.91
3	13	1	54	3.7	1.5	8	23	333	349	332	349	0.94
4	13	4.6	2.5e+02	1.7	7.6	3	23	438	459	437	459	0.95
5	13	4.5	2.4e+02	1.7	2.1	1	23	509	532	509	532	0.93
6	13	0.012	0.66	9.8	0.4	2	23	580	602	579	602	0.94
7	13	0.00041	0.022	14.4	0.1	3	23	625	646	624	646	0.96
8	13	0.006	0.32	10.7	3.6	2	23	698	720	697	720	0.96
9	13	0.082	4.3	7.2	4.2	3	23	735	756	733	756	0.92
10	13	0.00021	0.011	15.3	0.1	2	23	804	826	804	826	0.94
11	13	0.1	5.4	6.9	0.5	1	23	905	927	905	927	0.98
12	13	0.013	0.71	9.7	2.4	2	23	944	966	943	966	0.93
13	13	0.0053	0.28	10.9	0.8	1	23	1039	1062	1039	1062	0.98

Sequence Information

Coding Sequence: ATGTCGAATATGACATCGTCGCAAGACCCCACGACGACGGCAGCGGTGGAGACGACGGAACTGGACAGCGACGGTTCGAGCTGCGGCGAGCGCGACGTTTGGAAGCGCGTTCGCGGCGATTCCACCGACACTGGGCCCAAGAAGCGTCGAAAGCAGACCACGCCGGTAAGAGTTTCGTCTGGTCTTGCGGGCGTGCACGAGGATGCGCGCGAGGACGAGCGCGAAAACGAAGACGTCAAAGGTAAGCCGTCGTCGCGATCGCCGTTGCTGAGCAACGACCATCACCACCACCaacaccaccaccaccaccatcacCATCACTCGCCATCGTCGAAAGACGAGAATCTAAACAACGAGTTCCGCTGTCAGCACTGCGGTCGGCTCTTCGACAGCGACGAGACGCTCAATGTCCACGTGGACGGCGAGCACGGTGACGCAAATCAGGCGACGTCAGCTGTCACCATCAAGGTAGAGCCGGCGCAGCAGCTGGATCCAACTAATGAGAGTCCCGTTAGTCTCTTAAGCGTTAAGAACTTCGCAACCACGTGGTTGGCGTCCGGCAGCCAGCAGCACGTGCAATCGCAGACACAGATGCAGTCACAGAGCGATGACTCGTGGTCGAGCGGTCCGGTCAATCAAATCGTCACGATGACGAATCATTTACAGGCTCTCTCGAGTTTTCCGGGCACCCTCGCGCAGTATCTACCTCTGCCAAATTTTCCCCTGACCGATCCTCAACTCCCTAGATCCTCCCTCGGCCCTGTACCGGTCAAGATCTTTAATCCGGACGCGTATTGCGATATGTGCAACAAGGAGTTTTGCAACAAGTATTTTCTAAAGACGCACAAAGCCAACAAGCATGGAATCTACGTTGACTCGCCAGCGCCAATGGCTATAGACTCCATCAATGTCGCTGGCGGCAGCGTATTCAGTGCCGTGAACTTCCATGCGAGTAACGCGAGCGTGAAATTGGAGCCGCCGGCGACTCCGCCACAAAAACGTTTCCGCAACGAGGATTCTATGAAGAAGCACAAGCAAAAAACGCACAACGAATCACCTGTGGATCAGCAGTCAGATGGCCAACAGATCTCTATGCAGTCGCAGAGCGAGGAGGATCGAATGACGTCGCACGACAGTCCCAGCGGTATAGAAGCGCTCTTGAAGCAGGAATCGTACGGCATCGAGCAAGAAGATGCAACCTTTATGCCGGCCCCCAGACATCTCTCGCCCCAGTCCATCCAACAAGCACGTGATTCTGGTTTCAGCGCTGATCTTCTGCGCCGACTTGGCGTCATAAATCCCGAGGCATTTTGCGAAATCTGCTGCAAGGAGTATTGCAATAAGTATTTCCTACGCACGCACAAGATGAAACGGCATGGTGTTGTCGTGCAGGACAGCGAGCGATCGCCCGGTAGTTCCGGCACTACTGTCAACACCTGGCACCAGGTGCAAACCAGTCCATTGAACTTGATCGTGTCTGAAGCTGCTACGAGTGCGGAGTCTAATGACCGCGGCAGCGAGGAATACGAGTGTAAACCCTGCACTATTCGTTTTCAGACGATCGATCTGTATCAGGCGCATTGCAGGAAGATGCACGAGGGCGAGGAAAGCGGCTCGCCGAAACAAGAATACGACTTAGACGGCTCTGATCAGCGTAACGATTCGATCTCAGAAGACCTTCAGAAGCTGCAGACGATGATCATGCAGCTGAATGGTCTAGATTCTGGTAAGGGATTATCCTGCGCTGCCTGCAGCAGAGAATGTGATTCGAGGTCAGCCTTACGCGTTCACATGGCGACCGAACACGGTATCACCGGTGATGAACCCTCATTATCGCCGCAAAAGTCACCAATAGTCATTTCGACTATTCTCTGTACTCTCTGCGAGAAGGATTACCCTAGTCAAGATGCATTAAGGAGACATATTAACGAGGAACATCAGCCCATCGTATCCAGTGCTATTTCTCTGCCAGCACTGCCGCCAACAGTAATTGCCTCTTCCGCTAGTTCGACACCGACTAGTCAGACTCCAAGCGGTCAAGCAACAACGATGACAGATAAAAAGGTAACGTCACTAACTCCTACATCGAGCTATTGCGAGATATGCAACAAGGAGCTGTGCAATAAGTATTTCATGAAGACGCATATGCAGCGGATGCACGGCATCGAGATCGAAAACGGCGCACAGATTGGCGGCGTCATCTGCAACATTTGCAACAAGGAGCTTTGCAGCAAATACTTTCTGCGAGTTCACAAGCATAATACTCATGGAATCATCGACGATAACACGTCGTCATCAGCGTCGAACAACAAACAGGAATCTTATGATGTTCCTAGTGCCGAGGACTCGGCACTGAAACCGGAACAATTGGGCGATCTTAGTCATagatatttcattcatttcacCGAGGTATGTCCAATTTGCAGTCGGAGGTTCCGCAGCATCAAGTGGCTGAAGGCGCACTTAATGGGCGATCACGGCAAAGCGGGGATCGACAAATGGCGCGAATTGGAACAACAGTATCAAGTGACGTCCAGAACCTGTGGCAGAAGTGTTGTTTCGTCGAAGAATACGCAACAAACACCAAACCTGAAAATTCCCAATGGTTTCGAGGTTACTCAACAAATCAAACCTGTCGATTACACAAGTCTGGGAAATCAAATGCTGTCAAATCTTTTCGGTTCCTCATCTGAGGAGTctcaattaaagaattatcgCTGCGGCTACTGCAACTTTTCAACCCCTGTATTACCCTTTCTGTTTCTTCACGAGCGATCCCACGTGAATACACAGGAAAATCTCGAAGGAGATCGAGCGATCTCCTCATTACAATGTCCGATCTGCTCGCACGATTTTCATCAACCGGAACTGCTTCATCAGCATCTGCTTGCCAAGCATCAATTTCCTTCTCTGTTATCGCAATTTCCACATCCTCTCATGAATAATCTTAGATCAGACATTGATATCAAGACGAGCGATACCAAGAATAGAACTGATCAGGATACAAAAGACGATCGTGTGGGATGCAATCCACACACCGATCGGAATATCCCCGAGCCCACCAAAAACCAGCGGCAGGACGAAACTACAGTAAAAGTGACTCCTCAGGGTGTGTATAAATGCGCCCAATGCGGTTATGCGACGACAAATCTGAATCGCATCAAGAAGCACGTGCGGAAAGATCACAAGGCGATAGGCGATCCGACGGAAAGCGTGATTGCCGAGCTCAGCAAGACCCTGAAAGACGTAGCGAACAAGCAGAAGATGCCAGCCTGTTACGCGATGCCGCAGGATATGAACTCAAACCCCGACAAGACCATTATGCAACCGTTCCTGATCGAGGAGCAGGATCTGATGCAGGTGGGCGCCGAGTCTAGCTCGGCGAAGAAATTCGCGCCGGCTCTGGTCTACTTGCCGGTCAAGTCCAGAATCAGCAACTCCCTAACCGCCTCCTTCACTCTCACCCCCGCCTGA
Protein Sequence: MSNMTSSQDPTTTAAVETTELDSDGSSCGERDVWKRVRGDSTDTGPKKRRKQTTPVRVSSGLAGVHEDAREDERENEDVKGKPSSRSPLLSNDHHHHQHHHHHHHHHSPSSKDENLNNEFRCQHCGRLFDSDETLNVHVDGEHGDANQATSAVTIKVEPAQQLDPTNESPVSLLSVKNFATTWLASGSQQHVQSQTQMQSQSDDSWSSGPVNQIVTMTNHLQALSSFPGTLAQYLPLPNFPLTDPQLPRSSLGPVPVKIFNPDAYCDMCNKEFCNKYFLKTHKANKHGIYVDSPAPMAIDSINVAGGSVFSAVNFHASNASVKLEPPATPPQKRFRNEDSMKKHKQKTHNESPVDQQSDGQQISMQSQSEEDRMTSHDSPSGIEALLKQESYGIEQEDATFMPAPRHLSPQSIQQARDSGFSADLLRRLGVINPEAFCEICCKEYCNKYFLRTHKMKRHGVVVQDSERSPGSSGTTVNTWHQVQTSPLNLIVSEAATSAESNDRGSEEYECKPCTIRFQTIDLYQAHCRKMHEGEESGSPKQEYDLDGSDQRNDSISEDLQKLQTMIMQLNGLDSGKGLSCAACSRECDSRSALRVHMATEHGITGDEPSLSPQKSPIVISTILCTLCEKDYPSQDALRRHINEEHQPIVSSAISLPALPPTVIASSASSTPTSQTPSGQATTMTDKKVTSLTPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVICNICNKELCSKYFLRVHKHNTHGIIDDNTSSSASNNKQESYDVPSAEDSALKPEQLGDLSHRYFIHFTEVCPICSRRFRSIKWLKAHLMGDHGKAGIDKWRELEQQYQVTSRTCGRSVVSSKNTQQTPNLKIPNGFEVTQQIKPVDYTSLGNQMLSNLFGSSSEESQLKNYRCGYCNFSTPVLPFLFLHERSHVNTQENLEGDRAISSLQCPICSHDFHQPELLHQHLLAKHQFPSLLSQFPHPLMNNLRSDIDIKTSDTKNRTDQDTKDDRVGCNPHTDRNIPEPTKNQRQDETTVKVTPQGVYKCAQCGYATTNLNRIKKHVRKDHKAIGDPTESVIAELSKTLKDVANKQKMPACYAMPQDMNSNPDKTIMQPFLIEEQDLMQVGAESSSAKKFAPALVYLPVKSRISNSLTASFTLTPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423182;
90% Identity: iTF_00182867;
80% Identity: -