Acoo001642.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Atta colombica
Gene Symbol
-
Assembly
GCA_001594045.1
Location
NW:112916-118815[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.15 8.1 6.3 3.1 1 23 399 421 399 421 0.97
2 19 0.00069 0.037 13.7 0.6 2 23 458 479 457 479 0.97
3 19 7.4e-05 0.004 16.7 1.2 1 23 547 569 547 569 0.97
4 19 0.00094 0.05 13.3 1.0 1 23 572 594 572 594 0.97
5 19 5.7e-07 3e-05 23.4 1.0 2 23 642 664 641 664 0.97
6 19 0.019 1 9.2 2.9 1 23 670 692 670 692 0.95
7 19 0.00053 0.028 14.1 0.7 1 20 698 717 698 722 0.94
8 19 0.00017 0.009 15.6 2.4 1 23 789 811 789 811 0.97
9 19 0.00033 0.017 14.7 4.7 1 23 860 882 860 882 0.97
10 19 0.00038 0.02 14.5 0.6 1 20 887 906 887 908 0.94
11 19 0.04 2.1 8.2 0.3 2 23 919 940 919 940 0.97
12 19 2.4e-05 0.0013 18.3 0.6 2 23 979 1000 978 1000 0.97
13 19 2.1e-05 0.0011 18.5 1.5 1 23 1005 1027 1005 1027 0.95
14 19 0.0014 0.073 12.8 1.8 1 20 1033 1052 1033 1055 0.93
15 19 6.6e-06 0.00035 20.1 0.5 1 23 1071 1093 1071 1093 0.95
16 19 3.2e-07 1.7e-05 24.2 0.6 1 23 1099 1121 1099 1121 0.99
17 19 3.5e-05 0.0018 17.8 0.2 1 23 1127 1149 1127 1149 0.97
18 19 0.02 1.1 9.1 6.9 1 23 1155 1177 1155 1177 0.96
19 19 0.0043 0.23 11.2 0.6 1 20 1183 1202 1183 1204 0.90

Sequence Information

Coding Sequence
ATGGACGCCGTGGCGATACATACGTCGGATCCACCGCAGGGCGAGGACGCGATCACGTCCGCTATGAAGATATGCCGCATCTGCCTGCTCGACAATCTGATGATGCGCGATCTCTTCGCAGAGAGCGAGGTCGCGTCCCTATCGGTGAAGGCGATGAGCTTCGCCAACGTTAAGATGTTACCAGGTGATGGTTTACCAACACAGGTGTGTTGTATGTGCGCTGACAAGTTGGAATCGGCATACGAGTTTAAGTTACAAGTGGAGCAAGCTGACAATGTTCTTCGAGAAAAGCTTGTGGGAGGAATAATAAAGGATGAATTGTTTCTTAATGAAGTTGAAATACACTTGGATGCCGAGAAGAATAATGGTTTGGAAGAAATGAATGACAGTGCTGATTATGAATCTACTGATACATTGCCAGTTGAAACAGAAACTGACAAGAACTTtctgaaaaatcaattaattattttggaagCTGAAAAATTGGCAGAGACAGATGGAATGCAACAAGATTCAGAACAAGATAACTTGCAAGAAAGCATTGAGGAAGAATTGCAGCAAGAATTAGCCAACTCGGAAGACAATGATATGTCAGATGCTATTGATGAATCTAGGGATGAAATATCTTCCAACGACAAGAATATTATTCGAAGTTGTACAGATACAATTCCAACAGaagaacataattatataatgcaacAACAGTGTATTATCTTGCATACTGAACAATTCTCCttccataaaaaaatgcaGGAGACCGTACCAGAATTTAAACATGATATAACGGAATACAAAGAGTCGCTATCTGaacaaaatcaagaaaatcaaTCTGAGCAAAACGAAGAGATTCAGGCTGaacaaaatcaagaaatttcaaCTCAGCAAATTCACGAGACACTAGCTGAGCAAACTGAAGAGACTCCAGTTCAAAATGCTCAAGCTGAACAGGAGAATCAAACTgaacaaaatcaaaataaaaaaatggaattattacagaatgaagtattaaaaaatgatactaaTGAGCCAGTCGTGGAACAAGAATCACCTCAGAATGAAACTAGAAGAAGTAAACGTAAATTGGCTCGTCGGATATTCACCGAGCGGGATTCCGATGAGGAGAATTActttgaaaatctgaatctcAGTTCACGATTGAAAAAAGCGCAGGCAGATAAGACAGAGAAGATCTTTTTCATGTGTTACTTGTGCGATAAACAGTTTCTTTCAAAGAGCATCTTGAAAGAACATATGCATTCCCATGAAGAAGTAAGGAAAACATTGTCTCTGAAGAAAACACCGGAGAAACCGCAGAAGGTGCAGACCAGCGTTTCCGCTGTGAAAACGCCGGAATCAGGAAGAAAAGCCAACAAGTGCCCTTATTGTGGTAAAGAATACATGTACATAATCTCGTTTACTAAACACATTAAACAACACGAACGAGAGGGGCAGGAAGCGAAGGAAGATTCGATGTCATTTGAGATGTTTCATGAGGATGAGTACAGTCTAGACTTAGATAACGGCAACAAATCGGATGTTGAATGTAGAAAACAAAAGAGAGGAAGTATAGTCGACGACATTGCAAGCGACAATGATCAGGATAAAAAAGCGATAAGAAAGCGTAGTCTTATTGAggaatttatatgtaacaaaTGTCCAGAAAAATTCGATACAAAGCGAGGTTTGCAAAAGCATTCGCTCACGCATGTTAGCTTCAACTGCAGCGTGTGCAACGAGGAATACGACACTCTAGAACAACTAAAAAATCATCGAACAAAGCATGTGGTCGAAGGCGTACTCACTGAGCAAGACTTGGAAGAGGATATGAAGCAAATTACCAAGTGCGAAGagaatgatgatgatgacagCAAGAACATCAAAGATGGAGAGAACAGTGAATCCGCCGAAATTACGAAGGAACTAAAGTGTCCAATATGTTCAATAACATTCTCACGCAAGAAAGCACTCTCCAGACACATGCAGACAACACACTCCGACACCCATTCTTACGAATGCAAGATATGCTGTCAACAATTTGCACGGAAGGATTTCCTACGCAGACATGCCGAGCAGCATGCACGAGTGAAGACTTACAAATGTACTCAATGTAATAAAACCTTCGGCAATGAGCTCACATTGAGAAATCACTTGGTTGCCACAAATCATAAGACATTTATACAGGGACAGGAATACGATCCCAACAAGCGTATAAAACGCGTGGCGGCGAGAGCAGCACAGAAAATCATCGATAAGATCAAGACTGAGGACGGTCTCGAAGATTACGATGATAATACCGATTACGATATTAAATTGGACAAGCATTATGTCATTAAGCATGACGCAAAGAAGTACAGATATAAGGAATTTGAGTGTACGATCTGTAATAAGAGGTACTGTTTGAAACAAGCATTGGTGAGGCACATGGAGCAACATGTAAAGAAGGAAAAGGCAGAGAAAGCAATGGAGAAAGCGGTGGAGAAACAGAAGAAGGAAGCGCAGAAGAGCAACACGAACGATAACGACGACGGCGATACCAACTCCGACTTTGAAAGTGGTCTTGACTGGCCAGTAGACAGCCATGAATGCACCACGTGCAAGAAGCAATACAGTACGAAGAAGTCGTTACTGCGCCATCAACTGTTACATGAGGAGCCAAATTTCGAGTGCGATATCTGCAGTATCAAGTTCTATCGAAAAGACAAACTAAAGGCGCATTATGATAAGTGCGCGGAAAAAAATCCTGATCAGGTGAGGAAATGCAACATCTGCGGCGACAGTTTCGAAAACAATGAGATTCTGCGCGAGCACAGGGCCAAGCACGTCACCGAGGGCATCTTAACGGAGGAGGATCTGAGAGACACCGAGCCAAAATCCGAAGAAAAGAGactaaatgataaaatgaccCGGAAAAGGAGGACCGATATTGTGGGACTTGAGTGTACCGAATGCAATAAACAATATACCTCTAGGAAGGGCCTGTTGCGACACATTCAGGTTCACGAGGGCAAGAAGTACCTATGTGAAATATGCCCGAAGAAATTCTATCGGCGAGAACACCTGAAGATTCACGTGGCAAAACACAACATGATCAAACCATTCAAATGCACTCGTTGCTCCAAACGTTTCATTAAGGAGGAACAGCTCAATAATCATCTGCCTAAGCATGATCGCACTTTTAAGAAGAACAAAGAGACCGATAGCTCGAAGAGATTCCTCTGTGAAATATGCAGCAAGAGCTTTACGCAGTCGACAACGTTGCTAGCGCATCTGCGCGCTCATAAGGGTATCAAACCGTATGTGTGCGAAGTATGCTCCAGACCATTCACCACTAATGCCTACTTGAAGATGCATatgcgcacacacacgcaggAACGTCCGTACATCTGTCAATATTGTTCGCGAGCGTTTGCCCGTGCTGACACCTTGGCAAATCATTTGACGTCGCACACTGGCGAAGCCAAGTACCACTGCAAGTGCTGTCCGAAGAACTTCCGGCGATTGAAATCATTAAAGGAGCACATGTTTATTCATACGGGTCAACGACCTTACGAGTGTCCAACTTGCGACagaaagtttaataataacgGCAGTCGCTACGCGCACAGCAAGCGTTGCAAACAGAATCTTTTGCAGACTCAGAACCGGGCGCAACAGGTGATTCAGCAGACacaacagcaacagcaacaacaacagcTACAACATCAACATCAGCCACAGCAAGTGCAAATACAGATGCAATCAGAACCGCATCCAGTTAGGTTGCATCAAACCACGATCGGCCAGGCACAAGTAATCAAGGCGCAAAACATTAAAACAATCGCTATAGCGAGACAAGCTGAGCCTACGGTAACCACGCAACATCAGGTTATGCAGCATCAGGAAATACTAATGCCTTTAATCCTGCCACTTACCGTTACTCTTGCTGATGTAGGCGAAGAGGTGATACTACCTGAAGGTACAAAAATATTCACCACTTCTTAA
Protein Sequence
MDAVAIHTSDPPQGEDAITSAMKICRICLLDNLMMRDLFAESEVASLSVKAMSFANVKMLPGDGLPTQVCCMCADKLESAYEFKLQVEQADNVLREKLVGGIIKDELFLNEVEIHLDAEKNNGLEEMNDSADYESTDTLPVETETDKNFLKNQLIILEAEKLAETDGMQQDSEQDNLQESIEEELQQELANSEDNDMSDAIDESRDEISSNDKNIIRSCTDTIPTEEHNYIMQQQCIILHTEQFSFHKKMQETVPEFKHDITEYKESLSEQNQENQSEQNEEIQAEQNQEISTQQIHETLAEQTEETPVQNAQAEQENQTEQNQNKKMELLQNEVLKNDTNEPVVEQESPQNETRRSKRKLARRIFTERDSDEENYFENLNLSSRLKKAQADKTEKIFFMCYLCDKQFLSKSILKEHMHSHEEVRKTLSLKKTPEKPQKVQTSVSAVKTPESGRKANKCPYCGKEYMYIISFTKHIKQHEREGQEAKEDSMSFEMFHEDEYSLDLDNGNKSDVECRKQKRGSIVDDIASDNDQDKKAIRKRSLIEEFICNKCPEKFDTKRGLQKHSLTHVSFNCSVCNEEYDTLEQLKNHRTKHVVEGVLTEQDLEEDMKQITKCEENDDDDSKNIKDGENSESAEITKELKCPICSITFSRKKALSRHMQTTHSDTHSYECKICCQQFARKDFLRRHAEQHARVKTYKCTQCNKTFGNELTLRNHLVATNHKTFIQGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDDNTDYDIKLDKHYVIKHDAKKYRYKEFECTICNKRYCLKQALVRHMEQHVKKEKAEKAMEKAVEKQKKEAQKSNTNDNDDGDTNSDFESGLDWPVDSHECTTCKKQYSTKKSLLRHQLLHEEPNFECDICSIKFYRKDKLKAHYDKCAEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLRDTEPKSEEKRLNDKMTRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCEICPKKFYRREHLKIHVAKHNMIKPFKCTRCSKRFIKEEQLNNHLPKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLLAHLRAHKGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQTQNRAQQVIQQTQQQQQQQQLQHQHQPQQVQIQMQSEPHPVRLHQTTIGQAQVIKAQNIKTIAIARQAEPTVTTQHQVMQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00016834;
90% Identity
iTF_00014886;
80% Identity
-