Basic Information

Insect: Atta colombica
Gene Symbol: -
Assembly: GCA_001594045.1
Location: NW:1012433-1020351[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0053 5.2 6.3 2.0 4 43 60 102 58 103 0.82

2 12 3.9e-05 0.038 13.2 0.1 2 44 119 158 118 158 0.84

3 12 0.00033 0.33 10.2 0.4 5 39 175 208 173 215 0.92

4 12 0.00067 0.67 9.2 2.3 10 43 281 320 278 321 0.92

5 12 4.5e-06 0.0044 16.2 0.1 2 40 337 372 336 375 0.82

6 12 0.13 1.3e+02 1.9 0.5 9 39 397 426 393 433 0.77

7 12 0.0055 5.5 6.3 6.8 3 43 499 544 497 545 0.91

8 12 6.6e-10 6.5e-07 28.4 1.2 2 44 561 600 560 600 0.90

9 12 0.022 21 4.4 0.0 5 38 618 650 616 650 0.75

10 12 0.005 5 6.4 6.0 3 44 720 766 718 766 0.90

11 12 3.9e-10 3.9e-07 29.2 1.2 2 44 782 821 781 821 0.93

12 12 0.071 71 2.7 0.0 5 23 839 856 837 871 0.71

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0053	5.2	6.3	2.0	4	43	60	102	58	103	0.82
2	12	3.9e-05	0.038	13.2	0.1	2	44	119	158	118	158	0.84
3	12	0.00033	0.33	10.2	0.4	5	39	175	208	173	215	0.92
4	12	0.00067	0.67	9.2	2.3	10	43	281	320	278	321	0.92
5	12	4.5e-06	0.0044	16.2	0.1	2	40	337	372	336	375	0.82
6	12	0.13	1.3e+02	1.9	0.5	9	39	397	426	393	433	0.77
7	12	0.0055	5.5	6.3	6.8	3	43	499	544	497	545	0.91
8	12	6.6e-10	6.5e-07	28.4	1.2	2	44	561	600	560	600	0.90
9	12	0.022	21	4.4	0.0	5	38	618	650	616	650	0.75
10	12	0.005	5	6.4	6.0	3	44	720	766	718	766	0.90
11	12	3.9e-10	3.9e-07	29.2	1.2	2	44	782	821	781	821	0.93
12	12	0.071	71	2.7	0.0	5	23	839	856	837	871	0.71

Sequence Information

Coding Sequence: ATGAACAGAATGACACAACCAAGGACACAACAGTCTATAATTACTGAAAATGCAAATACAAACTCCCATCATGATGATATAAATAGGCAACCTCCTCGAAATGAAGATCAACAAAGCAACACATCACGATACTGTGCGGATTTAATGGCAGCTCTACAAGGATCAGACCATTGGGTGTGGGAACATCttaaattagataattctAATGTACGATGCAAAAGTTGTAttcaaacttataaaattggcaaaaaaaataaacttattgatATGATAGTGATAATAAAAGCACATTTATACCATAAGCATGAAATATGGAATAAAGAAGATCGCTTAAAATGGGAAAACGATAATGACTTGATATGGCGATACTTCGACAAAGTAGGCTTATACGaagcaaaatgtaaattttgtgaCCGTTTACTTCGTCAACCATATGTACCACTTATAAAGTCGCATTTGCAAAGTCATCATCAAGAAATAAGAGCTGGTGTACGAAAAGAAATTGCGGATAAATCTCTATCgcaatatttcgaaatttatgAGCAAGATTTTAGTGCACGGTGCAAACGTTGCAATGTTGAAATCGGCATATATTACGGAACAGATGCCTTAATACATCACatttgtttcaaaaagaatCAATCATTAGGATCTCAACAAGAATTTGATGATAATGATATGAACAGAATGACACAACAATCTGCAGCCGATGAAAATACAAGTTCACATGATATAAATAGACAAGTTTCTggaaatgaagaaaatgaacAAAGTAACACACGATACTGTGCGGATTTAATGGCAGCTCTAGAAGGATCGGACAATTGGGTGTCACAACATCttaaattagataattctACTGTACAGTGCAGAAGTTGTAttcaaacttataaaattggcaaaagaagtaaatttattgaaatgataACAATGATAAAGGCACATTTATACCATAAGCATGAAATATGGAATGAAGAAGATCGTTTAAAATGGGAAAATGACAATGACTTGATATGGCAATATTTCGACAAAGTAAGCTTATACGaagcaaaatgtaaattttgtgaTCGTTTACTTCGTCAACCATATGTATCACTTATAAAATCGCATCTGCAAAGTCATCGTCAAGAAATAAGAGCTGGTGTACGAAAAGAAATTGCGGATAAGTCTCTAtcgcaaaatttcaaaattcatgaGGAAGAATTTAGTGCACAGTGCAAAAGTTGCAATGTTGAAAACGACATATTTTACGGAATAGACGCTTTAATACATcacatttgttttaaaaataatcaatcttTAAGATTTCGACAAGAAACTGATAATAATGATGTGAACAGTATGACACAACAATTCATAGCCGATGAAAATACAAGTACAAGTTCACATCATGATATAAATAGACAAACTCCTAGAAAtcgagaaaataaacaaagtaATACATCGCGACAGTGTGAGGATATAACGGCAGCTCGACAAAGATCAGACAATTGGGTGTGGAAACATGGTCTTAAGTTAAACAATTCTACTATACGGTGCAATATAGATAAATGtaatcaaacttattatagtaaacataaaaatgtaagtatattgataaaatcgatgaaagtacatttatatcataagCATGAAATATGGACTGAAGAAGATCGCTTAAAATGGGAAAACAACAATGACTTGATATGGCAATATTTTGACAAAGTAGACTTATACAaaggaaaatgtaaattttgtaagaattttcGTCATGGAGcatatatacaaaatctaAAGTCGCATCTGCGAAGAAAGCATAGTGAAGAAATAAAAGCTGctatacaaaaagaaatttcatttaagtCGCTATcgcaatattttgaaattcaagAGGAAGAATTTAGTGCACGATGCAAACGTTGCAATGTTGAAAAGGACATATTTTACGGAACAGATGTCTTAATACGTcacaattgttttaataagaatCAACGTTTAAAATCTCGACAAGAACCTGAAGATAATGTGAACAGGATGACACAACAATCTATAGCCGATGAAAATACCAGTACAAGTTCACatcatgataatataaataaacaagctCCTGAAAATCGAGAAAATGAACAAAGTAACACATCGCGACTCTGTGCggctcgaagaagatcagacaATTGGGTGTGGAAACATGTTGTTAAATTAGACAATTTTACTGTAAAGTGCGAAATAGATAGttgtaataaaacttattatgaTAGTACTAAAAATTCATGTAGAAcgataagaatgataaaaggACATTTATACCATAAGCACAAAATATGGACCGAAGAAGATCGTTTAAAATGGGAAAACAACAATGACTTGGTGTGGgaatattttgacaaaatagACTTTTACAaaggaaaatgtaaattttgtaagaaTATTCGTCATGaagcaaatatacaaaatctaAAGTCGCATTTGCGAAAAAAACATAGTCAAGAAATAAGAGCTGctatacaaaaagaaattgcaTATAAGTCGCTATCacaatatttcgaaattcaaGAAGAAGAATTTAGTGCACGGTGCAAACGTTGCAATATTGAAAAGGACATATTTTACGGAATAGATGTCTTAATACGTCACAATTGTTTTGATAAGACTCAACTTTTGAAATCTGGACAAGAATCTGAAGACAATAAAATGAACAGAATGACACAACAGTCTATAGCCACTGAAAATACAAACTTCCATCATGATGATATAAATAGGCAAACTCCTCGAAATCAAGATCAACAAAGcaacacaggaataaataatttaagatctGACTctcattatcatataaataaaaattcgagaTCTAAAAAAGGAGATGCTGCAGATAATAGCGAGTATATGATGCAGCAAGACGTAGCAGCAGAAAATATGGCTACACATTATCATCATGAAAGTACATATTGGCATGATCTTGAAAATCAAGATCAACAGAGtgaATGTATATCAAGTTCTGGAGGAAATAACACGAATAACGTAGTATTCCTTGCTCATGATGTTTCGGATGTAAGTTCTCATCATGACGATACAAACTGGCAAGCTCTTGGATATCAAATAGATCAACAGAGaatTGTGCAGCAAGACGTAGCAGCAGGAAATATGGTTACACATTATCATCATGTAGGTACATTTTGGCATGGTCTTGAAAATCAGGAAAATCAACAGAGttctGAAGGAAATAACACGAATAACACAATATTCCTTGCTCATGATGTTTCGGATGTAAGTTCTTGTCATGATGATACAAACTGGCAAGATCTTAGATATCAAATAGATCGACAGAGaatgatGCAGCAAGACGTAGCAGCAGAAAATATGGTTACACGTTATCATCATGTAGGTACATTTTGGCATGGTCTTGAAAATCAAGATCAACAGAGTTCTGAAGGAAATAACACGAATAATACAGTATTCCTTGCTCATGATGTTTCGGATGTAAGTTCTCGTCATGATGCTACAAATTGGCAAGCTCTTGGATATCAAATAGATCAACAGAGTTCTGAAGGAAATGACATGAATAACATAGTATCCCTTGCTCGTGATGTTTCGGATGTAAGTTTTTCTCATGATGGTACAAACTGGCAAACTCTTGGATATCAAGTAGATCAACAGagATTTCAAGAAGGAACTAATGTTAGTAACGTGCACAGAATGCATCAATTCGTGGCAGCAGAAAATGTGACTACAAATTCTCATAATGACGGTACAACTTTGCAAGCTCCTggaaatcataaaaatcaataa
Protein Sequence: MNRMTQPRTQQSIITENANTNSHHDDINRQPPRNEDQQSNTSRYCADLMAALQGSDHWVWEHLKLDNSNVRCKSCIQTYKIGKKNKLIDMIVIIKAHLYHKHEIWNKEDRLKWENDNDLIWRYFDKVGLYEAKCKFCDRLLRQPYVPLIKSHLQSHHQEIRAGVRKEIADKSLSQYFEIYEQDFSARCKRCNVEIGIYYGTDALIHHICFKKNQSLGSQQEFDDNDMNRMTQQSAADENTSSHDINRQVSGNEENEQSNTRYCADLMAALEGSDNWVSQHLKLDNSTVQCRSCIQTYKIGKRSKFIEMITMIKAHLYHKHEIWNEEDRLKWENDNDLIWQYFDKVSLYEAKCKFCDRLLRQPYVSLIKSHLQSHRQEIRAGVRKEIADKSLSQNFKIHEEEFSAQCKSCNVENDIFYGIDALIHHICFKNNQSLRFRQETDNNDVNSMTQQFIADENTSTSSHHDINRQTPRNRENKQSNTSRQCEDITAARQRSDNWVWKHGLKLNNSTIRCNIDKCNQTYYSKHKNVSILIKSMKVHLYHKHEIWTEEDRLKWENNNDLIWQYFDKVDLYKGKCKFCKNFRHGAYIQNLKSHLRRKHSEEIKAAIQKEISFKSLSQYFEIQEEEFSARCKRCNVEKDIFYGTDVLIRHNCFNKNQRLKSRQEPEDNVNRMTQQSIADENTSTSSHHDNINKQAPENRENEQSNTSRLCAARRRSDNWVWKHVVKLDNFTVKCEIDSCNKTYYDSTKNSCRTIRMIKGHLYHKHKIWTEEDRLKWENNNDLVWEYFDKIDFYKGKCKFCKNIRHEANIQNLKSHLRKKHSQEIRAAIQKEIAYKSLSQYFEIQEEEFSARCKRCNIEKDIFYGIDVLIRHNCFDKTQLLKSGQESEDNKMNRMTQQSIATENTNFHHDDINRQTPRNQDQQSNTGINNLRSDSHYHINKNSRSKKGDAADNSEYMMQQDVAAENMATHYHHESTYWHDLENQDQQSECISSSGGNNTNNVVFLAHDVSDVSSHHDDTNWQALGYQIDQQRIVQQDVAAGNMVTHYHHVGTFWHGLENQENQQSSEGNNTNNTIFLAHDVSDVSSCHDDTNWQDLRYQIDRQRMMQQDVAAENMVTRYHHVGTFWHGLENQDQQSSEGNNTNNTVFLAHDVSDVSSRHDATNWQALGYQIDQQSSEGNDMNNIVSLARDVSDVSFSHDGTNWQTLGYQVDQQRFQEGTNVSNVHRMHQFVAAENVTTNSHNDGTTLQAPGNHKNQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00181447;
90% Identity: iTF_00182749;
80% Identity: -