Acoo000448.1
Basic Information
- Insect
- Atta colombica
- Gene Symbol
- bab1
- Assembly
- GCA_001594045.1
- Location
- NW:108801-114631[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.2e-17 4.6e-14 51.0 0.1 1 45 344 388 344 388 0.96
Sequence Information
- Coding Sequence
- ATGTCTGCTTCGCAACAGTACTGCCTCCGATGGAACAATCATCGCTCAAACCTGTTGAACGTCTTCGAGGAGTTGCTGCACAACGCGGCATTCACCGATGTCACCCTTGCTGTCGATGACGGTAGGACGGTCAAGTGTCACAAGATCGTGCTGGCTGCATGCTCGACGTATTTCCAGACTTTGTTTCACCAACTGCCAGGCTATAATTACCATCCAATAATCGTCCTTAAAGACGTTGGATTTCCGGAGATAAAGGCGATATTGGAATACATGTATCGTGGCGAGGTGAACGTGGCGCATGAACAGTTATCCGATCTGCTGAAGATCGCGCAAGTACTGAAGGTAAAAGGTCTGGTTGAGGAACACGGTAGCAATACACCAAATACGCACGATCTTCGCCCTGAGGAAACGTCGGTATCGCCGCCACCCGATATCAGTACCAGCACTAGCACCGGTGGTGGTGGCGCCAGCCACTCGTCACCGCCGTCTTACTATTCCCTTTACGGGAACTCGGTCTCGCACGATCGCGGTTCGAGTCACCTGGCAAGCTCATTACCAAGTACGTGGCCGTTGTTACATTCCACGGGTCATCAGCTTCCAACGTCGCTCTCCTCCGTTCTTGGTGGCAGTGGCGGATCCTACGACAACGGTATCGAAACCTCGCCGTTCAAACGCCGGAAGCTGCCGCAACCTCCGTCAGGCCTGCTGATAAATAACGACACGCCGATATTACGCACGGTACTTGGCCAGGCTCACGTTGACAGTTCGCAGGCTCTGCCGTTGTTGCAACCAGATAGCCATGAACCAGTCAACTACCGCAACGCAAACAGCAATGGATCCACGAACGACAGCGACAACCGCCGCAACAACGACCTGATTCACGGTGAAACGACGGTCCATGCAGATGCCTCCTATGCAGACGAAGATGAAAGACAATCGTCCCCGCAGTCTTATCCAGATACTGCAAGGAATTCAGCTGCTGCGGACTGCATTCAGCCGAAACCCGAATGGAAACGTTATAAGCAATATACTCGAGATGACATCAGCGCGGCGATCGAGGCAGTGAGAAAAGGTATGAGCGCCGTTCAGGCAGCGCGAAAATACGGTGTGCCATCGCGTACGCTTTACGACAAAGTGAAAAAGCTGGGTATCCCTACATCGCGACCATTCAAGCGTTCAGCAAGCAACGGAGGAAGCGGGGCTTGTTTCCCGTATGGCATCGGCGCCAACGTGAACGGCGCTCTTTATGACAACAGCGCCAGCAATGCCAATGCTCTCTCCGAAAATGAGAACGAGAGTAGCAATGTCAACGTCACTGAGAGTTTGGCCGGCACGAGTGCCGCAATTTTTGAAGCCGCATATGCAAAGACGAAGGATTCATCGCGGGACTCAATATCAGACTCGATGGCCCGTTGTAGCTCGAGTCCGGTGATACGTTGCGCTAAGCAAAgacagcaacagcaacagcaggACCTGGACGATCAAGTAGAGGATTTATCGGTGAGTCGCAAATCCGACGTGATTCCAGTGATAGTACCGCCGTCCACTACATCGACCGCGATTAAAGACGAGGTGCAAGAAACAGGATTGGATAGTAACGACTGTTGCGATTATAGTTAA
- Protein Sequence
- MSASQQYCLRWNNHRSNLLNVFEELLHNAAFTDVTLAVDDGRTVKCHKIVLAACSTYFQTLFHQLPGYNYHPIIVLKDVGFPEIKAILEYMYRGEVNVAHEQLSDLLKIAQVLKVKGLVEEHGSNTPNTHDLRPEETSVSPPPDISTSTSTGGGGASHSSPPSYYSLYGNSVSHDRGSSHLASSLPSTWPLLHSTGHQLPTSLSSVLGGSGGSYDNGIETSPFKRRKLPQPPSGLLINNDTPILRTVLGQAHVDSSQALPLLQPDSHEPVNYRNANSNGSTNDSDNRRNNDLIHGETTVHADASYADEDERQSSPQSYPDTARNSAAADCIQPKPEWKRYKQYTRDDISAAIEAVRKGMSAVQAARKYGVPSRTLYDKVKKLGIPTSRPFKRSASNGGSGACFPYGIGANVNGALYDNSASNANALSENENESSNVNVTESLAGTSAAIFEAAYAKTKDSSRDSISDSMARCSSSPVIRCAKQRQQQQQQDLDDQVEDLSVSRKSDVIPVIVPPSTTSTAIKDEVQETGLDSNDCCDYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00417696;
- 90% Identity
- iTF_00181231; iTF_00182064; iTF_00181402; iTF_01477491; iTF_01477713; iTF_01477014; iTF_01476847; iTF_00417696; iTF_00417480;
- 80% Identity
- iTF_00182064;