Acep003940.1
Basic Information
- Insect
- Atta cephalotes
- Gene Symbol
- bab1_2
- Assembly
- GCA_000143395.2
- Location
- NW:4789929-4792960[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-17 4.7e-14 51.0 0.1 1 45 344 388 344 388 0.96
Sequence Information
- Coding Sequence
- ATGTCTGCTTCGCAACAGTACTGCCTCCGATGGAACAATCATCGCTCGAACCTGTTGAATGTCTTCGAGGAGTTGCTGCACAACGCGGCATTCACCGATGTCACCCTTGCTGTCGATGACGGTAGGACGGTCAAGTGTCACAAAATCGTGCTGGCTGCATGCTCGACGTATTTCCAGACTTTGTTTCACCAACTGCCAGGCTATAATTACCATCCAATAATCGTCCTTAAAGACGTTGGGTTTCCGGAGATAAAGGCGATATTGGAATACATGTATCGCGGCGAGGTGAACGTGGCGCATGAACAGTTATCCGATCTGCTGAAGATCGCGCAAGTACTGAAGGTAAAAGGTCTGGTTGAGGAACACGGTAGCAATACACCGAATACGCACGATCTTCGCCCTGAGGAAACGTCGGTATCGCCGCCACCCGATATCAGTACCAGCACTAGCACCGGTGGTGGTGGCGCCAGCCACTCGTCACCGCCGTCTTACTATTCCCTTTACGGGAACTCGGTCTCGCACGATCGCGGTTCGAGTCACCTGGCAAGCTCATTACCAAGTACGTGGCCGTTGTTACATTCCACGGGTCATCAGCTTCCAACGTCGCTCTCCTCCGTTCTTGGTGGCAGTGGCGGATCCTACGACAACGGTATCGAAACCTCGCCGTTCAAACGCCGGAAGCTGCCGCAACCTCCGTCAGGCCTGCTGATAAATAACGACACGCCGATATTACGCACGGTACTTGGCCAGGCTCACGTTGACAGTTCGCAGGCTCTGCCGCTGTTGCAACCAGACAGCCATGAACCAGTCAACTACCGCAACGCAAACAGCAATGGATCCACGAACGACAGCGACAACCGCCGCAACAACGACCTGATTCACGGTGAAACGACGGTCCATGCAGATGCCTCCTACGCAGATGAAGATGAAAGACAATCGTCCCCGCAGTCTTATCCAGATACTGCAAGGAATTCAGCTGCTGCGGACTGCATTCAGCCAAAACCCGAATGGAAACGTTATAAGCAATATACTCGAGATGACATCAGCGCGGCGATCGAGGCAGTGAGAAAAGGTATGAGCGCCGTTCAGGCAGCGCGAAAATACGGTGTGCCATCGCGTACGCTTTACGACAAAGTGAAAAAGCTGGGTATCCCTACATCGCGACCATTCAAGCGTTCAGCAAGCAACGGAGGAAGCGGGGCTTGTTTCCCGTATGGCATCGGCGCCAACGTGAACGGCGCTCTTTATGACAACAGCGCCAGCAGTGCCAATGCTCTCTCCGAAAATGAGAACGAGAGTAGCAATGTCAACGTCACTGAGAGTTTGGCCGGCACGAGTGCCGCAATTTTTGAAGCCGCATATGCAAAGACGAAGGATTCATCGCGGGACTCAATATCAGACTCGATGGCCCGTTGTAGCTCGAGTCCGGTGATACGTTGCGCTAAGCAAAgacagcaacagcaacagcaggACCTGGACGATCAAGTAGAGGATTTATCGGTGAGTCGCAAATCCGACGTGATTCCAGTGATAGTACCGCCGTCCACTACATCGACCGCGATTAAAGACGAGGTGCAAGAAACAGGATTGGATAGTAACGACTGTTGCGATTATAGTTAA
- Protein Sequence
- MSASQQYCLRWNNHRSNLLNVFEELLHNAAFTDVTLAVDDGRTVKCHKIVLAACSTYFQTLFHQLPGYNYHPIIVLKDVGFPEIKAILEYMYRGEVNVAHEQLSDLLKIAQVLKVKGLVEEHGSNTPNTHDLRPEETSVSPPPDISTSTSTGGGGASHSSPPSYYSLYGNSVSHDRGSSHLASSLPSTWPLLHSTGHQLPTSLSSVLGGSGGSYDNGIETSPFKRRKLPQPPSGLLINNDTPILRTVLGQAHVDSSQALPLLQPDSHEPVNYRNANSNGSTNDSDNRRNNDLIHGETTVHADASYADEDERQSSPQSYPDTARNSAAADCIQPKPEWKRYKQYTRDDISAAIEAVRKGMSAVQAARKYGVPSRTLYDKVKKLGIPTSRPFKRSASNGGSGACFPYGIGANVNGALYDNSASSANALSENENESSNVNVTESLAGTSAAIFEAAYAKTKDSSRDSISDSMARCSSSPVIRCAKQRQQQQQQDLDDQVEDLSVSRKSDVIPVIVPPSTTSTAIKDEVQETGLDSNDCCDYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00417696;
- 90% Identity
- iTF_00181892;
- 80% Identity
- iTF_00181402;