Acoo008020.1
Basic Information
- Insect
- Atta colombica
- Gene Symbol
- bab1
- Assembly
- GCA_001594045.1
- Location
- NW:842405-1177603[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-17 1.5e-14 52.6 0.0 1 43 376 419 376 421 0.95 2 2 5.7 6.3e+03 -3.8 2.3 6 15 499 508 497 509 0.88
Sequence Information
- Coding Sequence
- ATGACGCAACAAAGTGGAGCTGGGTCACCCCAGCAGTTCTGTCTGCGCTGGAACAATTATCAGACTAATCTGACCAACGTCTTCGATCAGCTGTTACAGAGCGAAAGTTTCGTGGACGTAACCCTGGCCTGTGACGGGCATAGCGTTAAGGCCCATAAAATGGTCCTGTCAGCTTGCAGCCCGTACTTTCAGGCGCTCTTCTTCGACAATCCCTGCCAGCATCCTATAGTCATCATGAAGGATATCAAGTGGCCGGAGCTTAAGGCCGCGGTCGAGTTTATGTACAAGGGCGAGATCAATGTCTCCCAGGAACAGATTGGGCCATTGCTCAAGGTCGCGGAAAGTCTCAAGATCCGCGGCCTCGCGGACGTTAACAGCGAGCAGGAGCTGACGTCCAGGCCGAGTCTGGAGGAGGTCGCGACCGCGGCGATGCAACGGAAGAAGCGTCGTCGGATATCCGGCGATCGCTCACCATCCGGTAACAGTCCGGAACGTGTCGGCTCCGGCAGCATCGGCCCCGACGACGACGTGATCGGTAGTAACATCGTCGTGCCCGAGATTCACAGCATGGTGCCGTCGACGGCCAGTTCGACCCCGAGGTCTCTCGGCTCGCCTAGCACGCCCAGCATCTCCGTCACGCCGCAGATCAACCTGCAAGAACTTCCGGTCTCGCTACCCTTACCACCACCcccgccgccaccgccacaGGGACAGCAGAGCTCGCACCCCCTACCGACCCACCACGTGCCCGGCCACGTGACTTCCGGTCCGCACGCGCCCGTCAACCACCTGGGCGCCCATAGCCAGCAGCTCAGCgtgcaacagcagcagcagcaacaacagcaacagcagcagcagcaacagcagcatcATCAACAAAGCGCCGGCAATCCCGGCGCCGGCGACGACCTCGAGATCAAACCCGGCATCGCGGAGATGATTCGGGAGGAGGAAAGGGCCAAGTTGTTGGAGTCGTCCCACGCTTGGCTCGGCGCCTCCACCTCCAGTATAGCAGCAGACAGCTACCAGTACCAGCTGCAGTCCATGTGGCAGAAGTGCTGGAACACCAACCAGAGTCTGGTGCACAATCTGCGCTTCCGGGAACGTGGACCCCTCAAGTCTTGGCGGCCAGAGACTATGGCGGAGGCGATCTTCAGCGTACTGAAGGAAGGACTCTCCCTCAGCCAAGCGGCAAGGAAATACGATATCCCCTACCCGACGTTTGTCCTGTACGCGAATCGAGTACACAACATGCTGGGTCCTAGCGCCGACGGCGGGGCCGATTTGCGCCCGAAGGGACGAGGACGACCACAGAGGATTCTGTTGGGTGTCTGGCCAGACGAGCATATCCGCGGTGTGATTCGCGCGGTGGTATTCCGCGACGGGCACTCGCCACACATCGTCAAGGAGGAGCCGACCACGATGTACCCCAGCCTGGCGAACTACGCGGCTTGCAATGGTCCGGAAGGCGCAGTCAGTCCGGGTGCGGCAGCTGCGGCTGCGGTCGCGGCGGTCGCTCAAGGTCTGCGACACCAAATGTGCAGCATGGTGGCAGCGGCGCATTCGCAGCAACACGATATGATGGCGACGAACCTGTCGACGAGTCTGTCTACCAGTCTGTCGTCAAATCTACAAGCGGCGATGCAAGCTAGCCAGCACCATAACAACAATAACACGAGCAGCAACGCGAGTGGCCTCGGCAGCAGCAATAGCGCCGGCAACAACAACGGCAATTCACCATTGAATCTCGGTCTGGCGAGCCCGGGCTCGGGACCGCCCGAGAGTCCGTTGGAGAGTCCCCTGGCGAGCCCGTTGGGTCCGCTAATGGATCCAGCGGGTCACATACCCAGTAGCGTAGAAGTTGGCATCGGCGTGAGCGGCATGACGTACAAGCCGGCACGGAGCTTTGTCAGTCCACGCCCGGAGAATCTCTTCCAGGAGGACATCGCCGATCTGGTGAAGAGCCCCCACGGTCTTAAGGACAAGGACAAGATCCCGGTGAAGCTTGAACCGCTCACGGACTCGCGCTGCGAATAG
- Protein Sequence
- MTQQSGAGSPQQFCLRWNNYQTNLTNVFDQLLQSESFVDVTLACDGHSVKAHKMVLSACSPYFQALFFDNPCQHPIVIMKDIKWPELKAAVEFMYKGEINVSQEQIGPLLKVAESLKIRGLADVNSEQELTSRPSLEEVATAAMQRKKRRRISGDRSPSGNSPERVGSGSIGPDDDVIGSNIVVPEIHSMVPSTASSTPRSLGSPSTPSISVTPQINLQELPVSLPLPPPPPPPPQGQQSSHPLPTHHVPGHVTSGPHAPVNHLGAHSQQLSVQQQQQQQQQQQQQQQQHHQQSAGNPGAGDDLEIKPGIAEMIREEERAKLLESSHAWLGASTSSIAADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHIVKEEPTTMYPSLANYAACNGPEGAVSPGAAAAAAVAAVAQGLRHQMCSMVAAAHSQQHDMMATNLSTSLSTSLSSNLQAAMQASQHHNNNNTSSNASGLGSSNSAGNNNGNSPLNLGLASPGSGPPESPLESPLASPLGPLMDPAGHIPSSVEVGIGVSGMTYKPARSFVSPRPENLFQEDIADLVKSPHGLKDKDKIPVKLEPLTDSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141751;
- 90% Identity
- iTF_00898877;
- 80% Identity
- iTF_00182057;