Acoo002370.1
Basic Information
- Insect
- Atta colombica
- Gene Symbol
- retn
- Assembly
- GCA_001594045.1
- Location
- NW:832185-938968[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-25 1.7e-22 78.8 0.0 2 89 255 340 254 340 0.96
Sequence Information
- Coding Sequence
- ATGGACACTGCCGATGAGCAAGATATAGAGAATCCAGGTGGAGGCTCCATGGCCAACGGCGCCAACGGAACCAATGGCACAAATGGAGCCAATGGTCAACACCAGACGCCGGAGGGTTCTTTGTATCAGGAAGAGAAGTCGGAAGATGAATCAGATATGGACGATGAAACACAAGATGAAGAAGACTTACTCTCACAGTCACTTCAAGTCAATCCACAAGCTTTGGATGCAGCTGCAGGTGCATCTTCATTAGCACAGTTGAGCAATTTAATGAACACGCATCATCCACAGTTACTAGCGAAATTTAGATTGGAGcataCCGAGGCAGATATGTTACAAAGTAGAAATAGTTTAGAGGTTCTACAGGCTGCAATGACCAGTGGTAACTTCGGTACCTTATTTCCACCTTTATACATATCGTCGCCGCCACCAccgccgccaccaccgccATCATTATCATCACAACCGTCGCAAAACAACCATTCACAAATCGCAGGAAGTCTCGGGAATCAAATCGGTGAAAATCAAGCATTAGCTTGCTCCACTACTTCCACCAGATCTGTTGCCACCTCGCAGTCTAACGAATCGTCGCCACCTCGCTGCCGGAATAACGGAGAGTCGCAAGGAAATTCCAGGAATAACGGAGAAGCTCGTGAGGGTGAAACTCGTGCGGCATCAGTAAATAGTCAACATCCACCTGGAACTAATTGGAGCTTCGAAGAACAATTCAGACAGTTGTATGAGCTGGATGATACCCCTGAACGGAAGGTATTCCTTGACGACCTCTTTACTTTCATGCAGAGTAGAGGTACACCCATCAGCCGACTTCCCATCATGGCAAAATCCGTATTGGATCTTTATGAGCTTTACAAGTTAGTAGTATTACGAGGTGGACTGGTCGAGGTAATTAACAAGAAGCTGTGGCAGGAAATTATCAAAGGACTTCGACTACCAGCAAGCATCACTTCCGCCGCGTTTACTTTGCGAACTCAGTACATGAAATATCTGTATCCAtacgagaaagagaaggaaggaTTATCGACCCAAGAACAACTCCAGACGGCGATCGAGACAAATCGTCGCGAGAGCCGCAGGAACAATTACGCGGCTTACCCTGACAATCAAGTACCGCGAAACCAGCACAACTCGCTGCCGCCAAATCCAATGCCGTTGCCGCTCTCGATCGCCCAAATGGCGGTGGCTGCGAACGAATCGCAACATCATGTCGTAAATGGACATCCACATGGTCCGCAACATCATCCGCAACATCTTCCACCAAATCTGGGTAATCTTCCACCTAATCAGCTTTCAGATTATATGCTGAGGATATTGAGAGACAGAAACACAATGTCCAACAATCCGATGATTCAAGGTAGCACACCGACACCGCCACCAGCAATGGCAGAGGGATTTAAATCCGGACTGCATTTATGGAATATGTACAGTCcaggtaataataatatgtatccaGCAGCCCAACCTTTCTCTCCATCATCGTCTCATTCACCATTAGCACCGGCAAATAGTCCTGAACCACAGAGGGAAGCCTTAGATCTCGCAAATTCTGGAAACAGTAGATCCATTGGTTCACCATCATTTGGAGGAGAGTTGAAGAGAAATCAAGAACCTGGTGAACTTTCATCTCCAACGTCTTCTACTAAAAGAATGTTCTTatccgatgttgaaggaaataACATGGTGCATTCCTTGCGTATTAGACAAATGGTTAGCACTCGCGatcCTACAAGACGAAGAGAATTAGAAATTAGTGTAGATATTGATGGTATTTTATATGAAGGTGTCCTGGCAGTTAAACAGGAAGGCAGTAGTAATAATGGCAGTACCTCGTCGAGCCCCGATAATAATGGAAAACGGACACAAAATAACGATTCATGA
- Protein Sequence
- MDTADEQDIENPGGGSMANGANGTNGTNGANGQHQTPEGSLYQEEKSEDESDMDDETQDEEDLLSQSLQVNPQALDAAAGASSLAQLSNLMNTHHPQLLAKFRLEHTEADMLQSRNSLEVLQAAMTSGNFGTLFPPLYISSPPPPPPPPPSLSSQPSQNNHSQIAGSLGNQIGENQALACSTTSTRSVATSQSNESSPPRCRNNGESQGNSRNNGEAREGETRAASVNSQHPPGTNWSFEEQFRQLYELDDTPERKVFLDDLFTFMQSRGTPISRLPIMAKSVLDLYELYKLVVLRGGLVEVINKKLWQEIIKGLRLPASITSAAFTLRTQYMKYLYPYEKEKEGLSTQEQLQTAIETNRRESRRNNYAAYPDNQVPRNQHNSLPPNPMPLPLSIAQMAVAANESQHHVVNGHPHGPQHHPQHLPPNLGNLPPNQLSDYMLRILRDRNTMSNNPMIQGSTPTPPPAMAEGFKSGLHLWNMYSPGNNNMYPAAQPFSPSSSHSPLAPANSPEPQREALDLANSGNSRSIGSPSFGGELKRNQEPGELSSPTSSTKRMFLSDVEGNNMVHSLRIRQMVSTRDPTRRRELEISVDIDGILYEGVLAVKQEGSSNNGSTSSSPDNNGKRTQNNDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00016482;
- 90% Identity
- iTF_01477361;
- 80% Identity
- -