Acep001026.1
Basic Information
- Insect
- Atta cephalotes
- Gene Symbol
- -
- Assembly
- GCA_000143395.2
- Location
- NW:210852-216828[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0042 0.24 11.1 2.8 2 23 32 53 31 53 0.97 2 18 5.1e-05 0.003 17.2 1.5 1 23 55 78 55 78 0.96 3 18 0.00059 0.034 13.8 1.5 1 23 83 106 83 106 0.97 4 18 0.00013 0.0076 15.9 2.1 1 23 112 135 112 135 0.95 5 18 0.0007 0.04 13.6 2.0 2 23 142 164 141 164 0.95 6 18 0.001 0.058 13.1 0.2 1 23 169 191 169 191 0.97 7 18 0.00041 0.023 14.3 0.5 3 23 199 218 198 218 0.98 8 18 3.7e-06 0.00021 20.8 0.1 1 23 224 246 224 246 0.97 9 18 0.00033 0.019 14.6 0.8 1 23 252 274 252 274 0.97 10 18 9.7e-06 0.00056 19.4 1.7 1 23 374 396 374 396 0.97 11 18 0.0024 0.14 11.9 3.7 1 23 398 421 398 421 0.97 12 18 0.013 0.77 9.6 3.6 1 23 426 449 426 449 0.95 13 18 6.5e-05 0.0037 16.8 3.0 1 23 455 478 455 478 0.95 14 18 0.0097 0.56 10.0 0.8 3 23 486 507 484 507 0.95 15 18 0.00041 0.024 14.3 0.2 1 23 512 534 512 534 0.97 16 18 4.9e-06 0.00028 20.4 0.1 3 23 542 562 540 562 0.97 17 18 2.6e-06 0.00015 21.2 0.1 1 23 568 590 568 590 0.98 18 18 0.0013 0.072 12.8 2.1 1 23 596 618 596 618 0.97
Sequence Information
- Coding Sequence
- ATGTCAGAGATAAATACGAATTTAATGAGAGAAAAGCTTAATCAGCAAATCATAATTGAAGAGAATCGACCGATTAGAAAGAAGGCGTGTGTAGAGTGCGATCACTGTCGCCGTAAATTCTTGAAGAAGAGTAACCTCGTTGAACATCTGAAGCAACACAGACACAAATGCGCTGATTGCCCGAAAACTTTCAGCCTGCGACGTTATCTGGCCTCTCATATTGAGAAGAATCATCAGCAGCAGATGTATGAGTGCAGCGTGTGCAAGTATAAGAGTAATAACAAGGGAACCTTGAAGAATCACTACATCCGATTACACACGAGCAACTACGATTACGCGTGCGATACGTGCGGCAAGcagttcaaaataaaaaaggctCTGAATCACCATGTGAAGCAAAACCACAGCGAAGCTCCGCCGATTGTGTGCGATGTCTGCGGTCATTTCAGTAAAAATCTCCACGCCCTCAAGGCCCACATGAAATATAGACATTACAAGCCGGAGTTTGTCTGTCGAATATGTCGACGAGGTATGACCACGCAGGAAAATTTAGAGCAGCATCTCATGTGGCATGAAACTAGGGAGAAGGTACTCTGTCCGACTTGCGGCAAGAGATTCCGGGGACGCGATCTGGACTCACACATGAGAGTACACACTGGAGTGAAGCCATTTCCTTGCCCTGTCTGCGGAAAAACTTTTCGACGGCAAACTGCTCAAGAACAACACGTGTTGATCCATACCGGAAAAAGACCATACATTTGCGATATTTGTGGTCAGACATTTGCCCAAAAGCCCGGTTTGATCTGCCACAGAAAAAGACATCCTGGCCCACTGCCTCCGCTACCTGTAGTCTCTATCAAGAATATTGTCACCGAATTCACGAAGGAATACGCGATGAAAAACGCGtaTAACACtGGTTCACCTGTGGATCCTCTGGTCATGGACGCCAATAATGTGGAACACTTGTCCGAAACCATAGAATGCTTACCTGAGTACGACTTATTAccaaataaaatcaaacgaTACATCGCtaggagagaaagaaaaataaaagaagatacgAGAAAACAGAGCAAAATCAGTcagaacaaaattaataaaaagaaacctAAACTTTCTTTCGAGTGCGCCACATGCGGCCAATGTTTTAGTCAGAAAGCTACCATGATAAAACACATGAGCTTGCATAAATATCAATGCCAAACTTGTTGCCAGAGCTTTAGCCTGAAGCGAGAATTGAAGCGCCATATCATGAATGTTCATGGACCTCTCCTGTATCCATGCAGCATCTGTGACTACAAGAGCAACAACAAATGCACTTTAAAGGATCACTTTATACGGAAACACACTAGCGGCTTTCAGCATTCTTGTACGGTTTGCAATAAGcagttcaaaataaaaaacgatcTGAAACAACACATGAATCAAGTTCATAGTGGTGAACCGCCCATCATCTGCAGCATCTGCGGACACGCTTGCAAGAATGTTCCCGCTATCAAGGCGCACATGAAGTATCGACATTACAAACCGGCTTACGAATGCAAAATATGCAAGCGTGGTCTTACCACTCAAGAGTACCTCGACCAACACTTGATCTGGCATGAAAGAAAGGAGAAGGTCATCTGTCCTACCTGTGGCAAAACCTTCGGTCAGAAGAGGGACTTGGACCTTCATTTGAGGATTCATCAGGGTATCCGACCATTCTCTTGTCCAGTCTGCGGCAAAACCTTTCCCCGAAAGACTGCACAAGAACAACACATATTAATTCACACCGGCAAAAAGCCGTATATCTGCGACATATGCGGACACACCTTTGCGCAAAAACCCGGACTTATTTGTCACAGGAAACGGCATCCTGGACCGTTACCACCCTTGCCTGTGGTAtccattaagaaaataatcatgGAATTTACACAAGAATTAGTCTCTTCTACGCAACAAGATAAAGTAGATAgctaa
- Protein Sequence
- MSEINTNLMREKLNQQIIIEENRPIRKKACVECDHCRRKFLKKSNLVEHLKQHRHKCADCPKTFSLRRYLASHIEKNHQQQMYECSVCKYKSNNKGTLKNHYIRLHTSNYDYACDTCGKQFKIKKALNHHVKQNHSEAPPIVCDVCGHFSKNLHALKAHMKYRHYKPEFVCRICRRGMTTQENLEQHLMWHETREKVLCPTCGKRFRGRDLDSHMRVHTGVKPFPCPVCGKTFRRQTAQEQHVLIHTGKRPYICDICGQTFAQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFTKEYAMKNAYNTGSPVDPLVMDANNVEHLSETIECLPEYDLLPNKIKRYIARRERKIKEDTRKQSKISQNKINKKKPKLSFECATCGQCFSQKATMIKHMSLHKYQCQTCCQSFSLKRELKRHIMNVHGPLLYPCSICDYKSNNKCTLKDHFIRKHTSGFQHSCTVCNKQFKIKNDLKQHMNQVHSGEPPIICSICGHACKNVPAIKAHMKYRHYKPAYECKICKRGLTTQEYLDQHLIWHERKEKVICPTCGKTFGQKRDLDLHLRIHQGIRPFSCPVCGKTFPRKTAQEQHILIHTGKKPYICDICGHTFAQKPGLICHRKRHPGPLPPLPVVSIKKIIMEFTQELVSSTQQDKVDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00129179;
- 90% Identity
- -
- 80% Identity
- -