Apic018422.1
Basic Information
- Insect
- Aphaenogaster picea
- Gene Symbol
- -
- Assembly
- GCA_003063865.1
- Location
- NJRM01000067.1:66688-76875[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.049 5.5 8.1 3.5 1 23 9 32 9 32 0.95 2 16 0.00015 0.016 16.1 3.4 1 23 38 61 38 61 0.95 3 16 0.00069 0.078 13.9 0.8 2 23 68 90 67 90 0.95 4 16 0.0011 0.12 13.3 0.2 1 23 95 117 95 117 0.97 5 16 0.00064 0.072 14.0 0.4 3 23 125 144 124 144 0.98 6 16 3.9e-06 0.00044 21.0 0.1 1 23 150 172 150 172 0.97 7 16 0.00065 0.074 14.0 0.5 1 23 178 200 178 200 0.97 8 16 7.1e-06 0.0008 20.2 0.5 2 23 290 311 289 311 0.95 9 16 0.0025 0.28 12.2 3.7 1 23 313 336 313 336 0.97 10 16 0.049 5.5 8.1 3.5 1 23 341 364 341 364 0.95 11 16 0.00015 0.016 16.1 3.4 1 23 370 393 370 393 0.95 12 16 0.01 1.2 10.2 0.8 3 23 401 422 399 422 0.95 13 16 0.00011 0.012 16.5 0.2 1 23 427 449 427 449 0.97 14 16 3.7e-06 0.00042 21.1 0.1 2 23 456 477 455 477 0.97 15 16 2.8e-06 0.00032 21.5 0.1 1 23 483 505 483 505 0.98 16 16 0.0013 0.15 13.0 2.1 1 23 511 533 511 533 0.97
Sequence Information
- Coding Sequence
- ATGAACGTTCACGGAGCTCTCCTGTATCCCTGCAGTATCTGCGAGTACAAGAGCAACAACAAGTGTACTCTGAAGGACCACTTTATACGGAAACACACTAGCGGCTTTCAGCATTCCTGCACGGTCTGTAAGAAGCAATTCAAGATCAAGAACGACCTAAAGCAACATATGAATCAGGTACACAGCGGCGAGCCGCCGATCGTGTGCGACGTCTGCGGTCACTTCAGCAAGAACCTCCAAGCCCTCAAGGCTCATATGAAGTATAGGCACTACAAGCCGGAGTTCGTCTGCCGGATATGTCGACGAGGTATGACCACGCAGGAGAACTTGGAGCAGCATCTCATGTGGCACGAGACTAAGGAGAAGGTACTTTGTCCGACTTGCGGCAAGAGATTCCAGGGACGCGACCTGGACTCGCATATGAGAGTACACACTGGAGTGAAACCGTTCCCCTGCCCTGTCTGCGGAAAGACTTTTCGACGGCAAACTGCTCAAGAGCAGCACGTGTTGATCCACACCGGAAAGAGACCCTACATTTGCGATATTTGTGGTCAAGCGTTCGTTCAAAAACCCGGTCTAATCTGCCATAGGAAGAGACATCCTGGCCCGCTGCCCCCGCTACCTGTAGTCTCCATCAAGAACATCGTCACAGAATTCATGAAAGATGATTCACCCGTGGACCCTCTAAACGTCGTGGACGTCAATAATGCAGAACACTCGCCTGAAAGCATAGAATGCGTACCCGAGTACGacttattatcaaataaaattaaacgacATATCGCTAGGAAAAGAAATACGAGAGACGACACGAAGCAGAATTTCAATCGGAATAAAGTCGGGAAGAAGAAACCTAAACTTTCCTTGGAGTGCGCCACGTGCGGTAAACGTTTCAGTCAGAAAGCTACCATGATAAAACACATGAGCCTGCACAAATATCAATGCCAAACCTGCTGCCAGAGCTTTAGCCTGAAGCGAGAGTTGAAGCGCCACATCATGAACGTTCACGGACCTCTCCTATATCCCTGCAGTATCTGCGAGTACAAGAGCAACAACAAGTGTACTCTGAAGGACCACTTCATACGGAAACACACTAGCGGCTTTCAGCATTCCTGCACGGTCTGTAAGAAGCAATTCAAGATCAAGAACGACCTAAAGCAACATATGAATCAGGTGCACAGCGGCGAGCCGCCCATCATCTGCAGCATCTGTGGACACGCTTGCAAGAATGTGCCCGCCATCAAAGCACACATGAAGTATCGACATTACAAGCCGGCTTACGAATGCAAGATATGCAAGCGCGGTCTGACCACGCAGGAGAATCTCGACCAACACCTTATTTGGCACGAACGAAAGGAAAAGGTCGTCTGTCCCACCTGTGGCAAGACCTTCGGTCAGAAGAGGGACTTGGATCTTCACTTGAGGATTCATCAAGGTATCCGGCCGTTCTCCTGTCCGGTCTGCGGCAAAACTTTCCCCAGGAAAACTGCGCAAGAGCAACACATATTAATTCACACCGGCAAAAAGCCATATATCTGCGACATATGCGGACATACCTTCGCGCAGAAACCCGGACTCATCTGCCACAGGAAACGACACCCTGGACCACTACCGCCGTTGCCTGTGGTATCcattaagaaaataatcatGGACTTTACGCAGGAATTGGTTTCTTCTACACAACAAGATAAAGTAgatagttaa
- Protein Sequence
- MNVHGALLYPCSICEYKSNNKCTLKDHFIRKHTSGFQHSCTVCKKQFKIKNDLKQHMNQVHSGEPPIVCDVCGHFSKNLQALKAHMKYRHYKPEFVCRICRRGMTTQENLEQHLMWHETKEKVLCPTCGKRFQGRDLDSHMRVHTGVKPFPCPVCGKTFRRQTAQEQHVLIHTGKRPYICDICGQAFVQKPGLICHRKRHPGPLPPLPVVSIKNIVTEFMKDDSPVDPLNVVDVNNAEHSPESIECVPEYDLLSNKIKRHIARKRNTRDDTKQNFNRNKVGKKKPKLSLECATCGKRFSQKATMIKHMSLHKYQCQTCCQSFSLKRELKRHIMNVHGPLLYPCSICEYKSNNKCTLKDHFIRKHTSGFQHSCTVCKKQFKIKNDLKQHMNQVHSGEPPIICSICGHACKNVPAIKAHMKYRHYKPAYECKICKRGLTTQENLDQHLIWHERKEKVVCPTCGKTFGQKRDLDLHLRIHQGIRPFSCPVCGKTFPRKTAQEQHILIHTGKKPYICDICGHTFAQKPGLICHRKRHPGPLPPLPVVSIKKIIMDFTQELVSSTQQDKVDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00181466;
- 90% Identity
- -
- 80% Identity
- -